Detailed information on CNT30338871


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DG05|PSAH_ORYSJ, E-value = 8e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553623Eragrostis tefOryza glaberrima8.630.6890.9177forward

Expression of CNT30338871

Peptides detected in this lncRNA

>peptide 1 (92 aa)
MAIDPRTSGTVQVSRERKGEFNLDLAARALLRRQLRPLLDRQKVRRRVRADVGQQGAAAQQQELEQEAPLGERPGERLKELALQINTEIDSL*

>peptide 2 (35 aa)
MELPARPFTATGWTETAAREAIARGLVCTAPGGYWC

>peptide 3 (54 aa)
MARARRSRTGPIARWCCGCPQGRSRRSCRRTWPPRRREACNDQPCACTGVCHSS*

>peptide 4 (47 aa)
CVHFSQGTCNGSIRTRNFSRNKDNTKNVLEDAQHQFTCMTTSTVLTA*

Sequence

>CNT30338871
ATGCGTACATTTCTCCCAAGGTACGTGTAATGGTTCCATTCGCACTAGAAACTTTAGTCGCAACAAAGATAACACAAAAAACGTTTTAGAAGACGCACAA
CATCAGTTTACTTGTATGACAACGAGTACAGTATTAACAGCATAAATGGGCATGTTCCATGGCGATCGATCCGAGAACTAGCGGTACGGTACAAGTAAGC
AGGGAAAGGAAGGGGGAATTCAATCTAGATCTTGCCGCGCGGGCCCTTCTGCGGCGGCAGCTGCGGCCCCTTCTTGATCGGCAGAAGGTCCGGCGACGCG
TTCGCGCTGACGTAGGCCAGCAGGGAGCCGCCGCCCAGCAGCAAGAACTTGAGCAGGAGGCCCCTCTTGGTGAACGGCCCGGCGAACGTCTCAAAGAACT
TGCTCTGCAAATTAACACAGAAATTGACTCGTTGTGAACGGTCCGGCCTCCCTTTGTGAACAACTAAGTGCACGGCGAAGAAGAACAGCACGCACCTGAA
GAGGGTTGTATGGCGAGGGCGCGTCGGAGCCGTACAGGTCCCATTGCCCGGTGGTGTTGCGGATGTCCTCAAGGTCGAAGTAGACGCTCTTGTCGCCGTA
CTTGGCCACCACGGCGGCGCGAGGCCTGTAACGATCAGCCATGTGCATGCACCGGCGTGTGTCACTCTAGCTAGATATCGTGCTGTACAAATACGATTTA
GCTTAATAAGCCTGTGTTAACGTACTTGCGGGTGGAGCGGCAGACGGCGCGGGAAGAAGGCCTGACGGCGAGCTTCCTGCCGGAGATGGAGCTGCCGGCG
AGGCCCTTCACGGCCACGGGCTGGACGGAGACGGCGGCGAGGGAGGCCATTGCGCGCGGTTTGGTGTGTACAGCTCCTGGAGGATACTGGTGTGG