CANTATAdb - search

Detailed information on CNT30338860

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG86|RS271_HORVU, E-value = 1e-81

BLAST vs NONCODE:
NONGMAT000502, E-value = 4e-39

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30674447	Eragrostis tef	Setaria viridis	22.51	27.78	96.76	185	forward
CNT30220676	Eragrostis tef	Hordeum vulgare	28.95	42.27	97.48	238	forward
CNT30456592	Eragrostis tef	Saccharum spontaneum	27.25	27.25	95.98	224	forward
CNT30497500	Eragrostis tef	Digitaria exilis	28.71	15.95	96.19	236	forward

Expression of CNT30338860

Peptides detected in this lncRNA

>peptide 1 (34 aa)
DSEMVKIDQNHDSIYVTKIKLASHQLSNRRSNQI*

>peptide 2 (63 aa)
MRRCWSGGMPSLSWIFAFTLSMVSEDSTSSVMVLPVRVFTKICILAGVGGRLRAAAAATAAAG*

Sequence

>CNT30338860
TGATAGCGAAATGGTAAAGATAGATCAAAATCACGACAGCATATATGTAACCAAAATTAAACTCGCATCGCATCAACTCAGTAACAGGCGTTCCAATCAG
ATATAGATACTGCTACTCCATTCAAGTTTCAACCTCAGACACGATCTAGATAAGATTCAATTCGAGCAACAAACGGCTCGTTTTTTCAGATAGGTAAAAG
CTAAGCAGAGCGAGCCCTCCTTACGCCTTCTGGTTGTAGACGTAGGTGAGGCCGCACTTGCCGCAGTAGTGGCGGTCGAAGTGGTTGGCCATGAAGGTCC
CCGCGCCGCAGTCGGCGTTGGGGCACTCCTTGCGGAGGCGGGTGACCTTGCCGCTGGCGTCGTCGACCTTGTAGAACTGGAGCACGGCGAGCTTGACCTT
CTTGTGCTTGTGCTTTTGCTTCTTGGGCTTGGTGTAGGTCTTCTTCTTGCGCTTCTTGGCGCCTCCGCGGAGGCGGAGCACCAGGTGCAGCGTGGACTCC
TTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGA
TCTTCGCCTTCACGTTGTCGATGGTGTCTGAGGACTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGGCGGGGGT
AGGGGGTCGCCTCCGCGCGGCGGCGGCGGCGACAGCGGCGGCGGGGTAGGGTTTGGGAGGGGTGGGGGTGGAGGCTAGGGTTTCGGCGGCTACGGTAGTT
GTTCAACTATATAGAGAAAGCG