Detailed information on CNT30338817


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LT68|NHD1_ARATH, E-value = 7e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30556731Eragrostis tefPanicum hallii96.514.5194.72303forward

Expression of CNT30338817

Peptides detected in this lncRNA

>peptide 1 (50 aa)
QHIEKFTFRKYQKKSTFSIPIKATPAAEPMISIEPPVPAQNAISCQKSES*

>peptide 2 (47 aa)
TYREVYLPKIPKEIHLLHSHKSYSCRRANDKHRTTSTSTECNKLPEV*

>peptide 3 (32 aa)
MVAATSGTLSTTADATPIALAIRSAFGILASR*

Sequence

>CNT30338817
CAACATATAGAGAAGTTTACCTTCCGAAAATACCAAAAGAAATCCACCTTCTCCATTCCCATAAAAGCTACTCCTGCCGCAGAGCCAATGATAAGCATCG
AACCACCAGTACCAGCACAGAATGCAATAAGCTGCCAGAAGTCTGAATCTTGAGGATATGAAGTCAGGTCATACATTCCCATGGTTGCAGCAACAAGTGG
AACATTGTCTACAACTGCTGATGCCACACCAATTGCACTAGCAATAAGATCAGCATTTGGAATATTGGCATCAAGATAGTTTGCTAACTGCCTCAAAATC
CCTGCAGATTCCAA