Detailed information on CNT30338809


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LT68|NHD1_ARATH, E-value = 7e-42

BLAST vs NONCODE:
NONORUT002948, E-value = 2e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671584Eragrostis tefSetaria viridis7.3954.4596.86159forward
CNT30553408Eragrostis tefOryza glaberrima31.5588.7683.06679forward
CNT3099993Eragrostis tefOryza rufipogon23.2885.7982.04501forward
CNT30577275Eragrostis tefOryza barthii30.9935.0982.16667forward
CNT30116624Eragrostis tefOryza nivara31.5565.682.77679reverse complement
CNT30593354Eragrostis tefEragrostis curvula11.8510098.04255forward

Expression of CNT30338809

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MAGVGPEWSHSMVHALALDARTWPRGDVHGLGLIDEDVDLLKG*

>peptide 2 (34 aa)
MNNYESLAIGLNKYINIVTVNVINCRTAELTVEM*

>peptide 3 (32 aa)
MVAATSGTLSTTADATPIALAIRSAFGILASR*

>peptide 4 (29 aa)
MSTSCNFFFESSSRKNSEVKCAWPGAMGD*

>peptide 5 (44 aa)
MGSQPVKWEETDGDFEQLNKRKCQLHNLQGHNRSPANKRMLNDE*

>peptide 6 (60 aa)
LIGLIEYSCQQVTTSFPEAHLERTLRLSVLGLERWVIDREVLPGCARVRTMCEEKTCVGL*

>peptide 7 (67 aa)
LNRIDRILMSTSYNFFSGSSSRKNSEVKRAWPGAMGDRPGSPSRMRTSEDNVRRKDMCWSVRLVLMS*

>peptide 8 (94 aa)
MTFIFLVTVICGISIMLSDRPPTYREVYLPNIPKEIHLFHSHKSYSCRRANDKHRTTSTSTVCNKLPEVRILRICSQVIHSHGCSNKWNIVYNC*

Sequence

>CNT30338809
CTTAATAGGATTGATAGAATACTCATGTCAACAAGTTACAACTTCTTTTCCGGAAGCTCATCTCGAAAGAACTCTGAGGTTAAGCGTGCTTGGCCTGGAG
CGATGGGTGATCGACCGGGAAGTCCTTCCCGGATGCGCACGAGTGAGGACAATGTGCGAAGAAAAGACATGTGTTGGTCTGTGAGGTTAGTCTTGATGTC
CTAAAGAGCTGCCAGGTGTGCGGGCCCGGCCTCGGGGAGGCGAGACGCTACAGTGGTATCAGAGCCGACACTCGCGGTTTCACGGGCGCGTGTGGGCGCA
GTAGGCGCATGGCTGGTGTGGGCCCAGAGTGGTCACACAGCATGGTACATGCGCTGGCACTGGACGCACGGACGTGGCCAAGAGGGGACGTTCATGGATT
GGGGTTGATCGACGAGGACGTCGATCTTCTAAAGGGGTGAGTATGTGAGATCCCGGCACAAAGCTTAATAGGATTGATAGAATACTCATGTCAACAAGTT
GCAACTTCTTTTTCGAAAGCTCATCTCGAAAGAACTCTGAGGTTAAGTGTGCTTGGCCTGGAGCGATGGGTGACTGACCGGGAAGTCCTTCCTGAATACG
CACGAGTGAGGACAATATGCGCAGAAAAGACATGTGTTGGTCTGTGGTGTTAGTCTTGATGTCCTAAAAAGTTGCCAGGTGTGCGGACCCGGCCTCGGGG
AGGCGGGACGCTACAAAGTGAGACTATGCCTGTCATATATTTTATATGCCGATGGAAGTGTGTATGATTTGACATATAATATGTAAAGAGGTATTTACAA
TGGCATTCAAAAAGATGAAAAAAGAATCGTTGCCCTGCCAAAGATATTAATCTTACATAACAGATTTGGCAGGGCAATAATTCTTTTTCATCCCCATATC
TAAAGAGGTCTATCTTACAGAACTACAAATGCCAAACTTTTATGAACCCGAAATAAATGGGATCTCAGCCAGTGAAGTGGGAAGAGACAGATGGAGATTT
TGAGCAGCTAAATAAGAGAAAATGCCAGCTGCATAACCTGCAAGGGCATAACCGCTCACCTGCAAATAAAAGAATGTTAAACGATGAATAATGTGGCCAC
ACCACTTAGACGGGCATGTATGTGTGATATAGCAGGCCTGGTTTAATTGGATGACTGCTGTTGGTATCATGAGGCGTTCTAGTGTGAGAAAAAATTACAA
ATTACTATTTGATTTATAACCAATTACTCCAAATGTGAAAAGAAATGTGCGGGTGACAGAATTTTTATGGAATTCTAGGCTGAGAAGCCTCAGATTGATT
GCTGCAATAAATGTCAACCAAGAGTTAAAATAATTTAACCAACTGATGCATTTTAGCAGTAAGAATGAATGAATAATTATGAAAGTCTGGCAATAGGCCT
AAACAAATATATTAATATTGTTACAGTTAATGTAATTAATTGTAGAACAGCTGAACTGACTGTAGAAATGTAGAAGAGCAGAACTAAATCCTTGTCTAGA
CAGAGAAACTGATTTTCTGTTTGCCACAATGAAATATAAATGTCCCATTCATGTGTATCTACCTATGTTTAAACAAAACATAAGTACATGCGGCACAGTA
AAGAGTAACTAGAAACAGAATCAGTTGAAAACATTGTCTATGCAAAGATCTACAATAATCAACTCATGTAGTAACTAGTAAGGTGCAGCGTAAGATCATA
ATTTTTCTCTCAACAGTATGTTTCTAAATGTCAGCAAGTACAGATAAGATTCAACAGGTTTATATAAAAAATAATGACATTTATTTTCCTTGTAACTGTA
ATATGTGGTATTAGTATTATGTTGTCCGACAGGCCCCCAACATATCGAGAAGTTTACCTTCCGAATATACCAAAAGAAATCCACCTTTTCCATTCCCATA
AAAGCTACTCCTGCCGCAGAGCCAATGATAAGCATCGAACCACCAGTACCAGCACAGTATGCAATAAGCTGCCAGAAGTCCGAATCTTGAGGATATGCAG
TCAGGTCATACATTCCCATGGTTGCAGCAACAAGTGGAACATTGTCTACAACTGCTGATGCCACACCAATTGCACTAGCAATAAGATCAGCATTTGGAAT
ATTGGCATCAAGATAGTTTGCTAACTGCCTCAAAATCCCTGCAGATTCCAAG