Detailed information on CNT30338771


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30245648Eragrostis tefAvena sativa13.6522.4786.14202forward
CNT30148488Eragrostis tefBrachypodium distachyon4.3220.6592.1964forward

Expression of CNT30338771

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MKLPFDLASIIKSTVYVTRFLPLANDGSLSHPTKVSSR*

>peptide 2 (38 aa)
MNPSRVLFQVDATGNKSHYPSGVLPDISAILACRTKYL*

>peptide 3 (50 aa)
MPPATRATIQAACSLISLLYWLVGPSISSNLWVMWLEEADMVSRCFASSA*

>peptide 4 (38 aa)
MSTMASWKAVTRSGVTHCVMSLAPGLWAHGLTRMHVAM*

>peptide 5 (71 aa)
TQQHERRRRRRRNPIPIPTIANYCLVVYLSPPYLALCTCPLFFLAFFLTTKVYYCLLPLMMLLLTSHQKLL*

Sequence

>CNT30338771
CACCCAACAACATGAAAGAAGAAGAAGAAGAAGAAGGAATCCAATACCAATCCCCACTATTGCCAACTACTGTCTAGTTGTCTACTTGTCCCCTCCATAC
CTGGCTCTATGTACTTGTCCATTATTTTTTCTTGCTTTCTTTCTTACTACTAAAGTTTATTATTGTTTGTTGCCTTTGATGATGCTCTTGCTCACCAGTC
ACCAGAAGCTGTTGTAATTAACTGATTGACCGCTTCGCTAACTACCGCAGTGAATGAAATGAAAAATAATAAGGTGTATATAATCCCCATGAGAAGGAAG
TGAGACGAGGTGGAGAGAGAGGCTAGTTCATGTCCACCATGGCGTCGTGGAAGGCGGTGACGCGGTCCGGGGTGACGCACTGCGTGATGAGCCTTGCCCC
TGGCTTGTGGGCCCACGGCTTGACGAGGATGCACGTGGCGATGTAGTCCAGGTTGGTCAGCGGCACGACGTGGGCCGGCGGGCCCCAGCCGTAGTCCACC
TCGGCGAAGCCCAGTCGGGTCCAGTCGGAGACTAGGGGTGCCGTGATCTTCGGCAGCAGACCTTCAGTAATGATTATAACTCTGCAATTGCCCTCATGGG
CGGCGAGCTGATTAAGGATATTGAAGCCCTCACACACCAGCGGATAGTGGTCTTGGAGGATATTACTGTCACTCTCCCTTGAGTTTCTGTCGACAGTATA
ATCTGTTCTTTTACCATCTACTTTACTGTCTCGCTCGTATTCCTCGGGAACCCAATTGTATTCATCAAGTGGGGCGAGCAGGGAAGATATGCAATGAATC
CATCCCGGGTGCTCTTCCAAGTGGATGCCACCGGCAACAAGAGCCACTATCCAAGCGGCGTGCTCCCTGATATCTCTGCTATATTGGCTTGTAGGACCAA
GTATCTCTAGCAATCTGTGGGTCATGTGGCTCGAGGAAGCTGACATGGTCAGCAGATGTTTTGCTAGCTCCGCCTGATCAAAACCCTCGGTGACCGTGCT
CAGAGCTCTTATCCCGGCAATGAAGCTGCCATTCGACTTAGCTTCCATCATTAAGTCCACTGTGTATGTGACAAGATTCCTTCCGTTGGCAAATGATGGA
TCCTTGTCGCACCCCACTAAGGTGTCCTCTAGATAGTCTGCAACTAGCTTTTCGTTGACTGAACAAGTATCTGCAACGTATTTCACTATCCCCATTTTTG
CCCCGAAAGCATGTATGTGCTTGTAACCGAAGAGCGCACCTTGTGCCACTGCCAAACTGTACAGAATTTCTAGTGCTGGTTCCAGGTTTGCAGCCCCCTC
AGCATTACTGAAGTCGTGCTCTATTAGACGCCACAAGGATATCCCGGCAGAGATACACATCCCAAACATGTAGAGAGCTGCGACAGGACATAATATGATA
GCAAGAACAAGTGCTTGCATCACCGCTAAAACAAATGCTAGAAACATGGATAAAACCAATGTTGCGCAATTCCCTTTTCC