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Detailed information on CNT30338628


BLAST search results

BLAST vs Swiss-Prot:
sp|P29766|RL8_SOLLC, E-value = 8e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546122Eragrostis tefIpomoea triloba24.792592.0588forward
CNT30616186Eragrostis tefSesamum indicum16.6225.5491.5359forward
CNT3086243Eragrostis tefVigna radiata61.4148.7784.86218forward
CNT30555939Eragrostis tefOryza glaberrima34.6531.5491.87123forward
CNT30146667Eragrostis tefMedicago truncatula20.2825.5386.1172forward
CNT30440942Eragrostis tefAegilops tauschii28.4546.5495.05101forward
CNT30721746Eragrostis tefTriticum spelta45.3510.0192.55161forward
CNT30367313Eragrostis tefSorghum bicolor64.2340.1497.37228forward
CNT30646608Eragrostis tefCannabis sativa62.5447.6484.23222forward
CNT30150825Eragrostis tefBrachypodium distachyon24.2314.5394.1986forward
CNT30104724Eragrostis tefOryza rufipogon78.0326.5393.86277forward
CNT30578506Eragrostis tefOryza barthii78.0317.4293.86277forward
CNT30117466Eragrostis tefOryza nivara34.6511.0191.87123forward

Expression of CNT30338628

Peptides detected in this lncRNA

>peptide 1 (32 aa)
CRWRGWRGGRSRRTGRCTSPRRRRRAPSGACT*

>peptide 2 (66 aa)
MTSVTTPLRYPLRSPKSRERNRAGPLRWWVWDLNTDPAPLRCARITRPISAATAEAAAGGAMRKWAR

>peptide 3 (51 aa)
ADGEGGAAAAVDELAGVHPLGGDEELLLVLVPEGVAEGDLGERRATARGRG*

Sequence

>CNT30338628
TGCCGATGGAGAGGGTGGCGCGGCGGCCGCAGTAGACGAACTGGCCGGTGTACATCCCCTCGGCGGCGACGAAGAGCTCCTTCTGGTGCTTGTACCTGAA
GGGGTGGCGGAAGGTGACCTTGGCGAGCGGCGCGCCACGGCCAGGGGTCGTGGATGACGTCGGTGACGACGCCCTTGAGGTACCCGTTGCGCTCGCCGAA
GTCGAGGGAGCGGAACCGGGCGGGGCCCTTGCGGTGGTGGGTGTGGGACTTGAACACGGACCCCGCACCCTTACGCTGCGCGCGGATCACGCGACCCATC
TCGGCGGCGACGGCGGAGGCGGCGGCGGGAGGGGCGATGCGGAAATGGGCGCGGC