CANTATAdb - search

Detailed information on CNT30338470

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30676538	Eragrostis tef	Setaria viridis	16.59	21.37	89.91	109	forward
CNT30367109	Eragrostis tef	Sorghum bicolor	31.51	53.35	84.06	207	forward

Expression of CNT30338470

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MTPALAAPVVAVTANTAARPRSAARRPSGATCTLLTGEAAADCGTAAAGLSPTTLEFTPAMSSC*

>peptide 2 (34 aa)
CRFTLPKVVHDHIRGYKYTDNKVTSKYFSSVGGI*

Sequence

>CNT30338470
CTGCAGGTTCACTCTCCCCAAAGTGGTTCATGATCACATAAGAGGATACAAATACACTGACAACAAAGTTACATCCAAATATTTTTCTTCAGTAGGGGGC
ATCTAGGTACAGAACTCCCGGCCGTCAATAATCAGCCGCATCACCATTTCCAGAAGACGTTTGAGCCGCACTTGTACTTCTCCTTCCCCTCGCACTCAAT
CTCGAGGTACTCATCGATGACGCCGGCCTTGGCAGCTCCGGTGGTGGCCGTGACAGCGAACACGGCCGCAAGGCCGAGGAGCGCCGCGCGGCGGCCCTCG
GGCGCGACCTGCACCCTCTTGACCGGCGAGGCGGCGGCGGACTGCGGCACCGCCGCGGCAGGCTTGAGCCCGACAACGCTGGAGTTCACGCCGGCCATGT
CCTCTTGCTGATGCGGCGGCGGACTGCGGCACCGCCGCGGCGGGCTTGAGCCCGACAACGCTGGAGTTCACGCCGGCCATGTCCTCTTGCTGATGTGTCC
TCGGGCTATGTGTGTACTGCTCGTCGTTCCTGGTTGGCAGCAGGGAATGGGGTGGCGATGGTTTTGTTTTTGATCCCCGGAAGGAGATGTTAGTGGAGGG
AAAATTGTGCTGCGTGACTTGTGGTGGGCGTGTGGATAGGGTGAGGCTTCCTTCAAC