Detailed information on CNT30338445


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FEQ8|PER2_MAIZE, E-value = 4e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675075Eragrostis tefSetaria viridis6.3722.9493.3375forward
CNT30523062Eragrostis tefSetaria italica6.4620.0590.7976forward
CNT30100585Eragrostis tefOryza rufipogon18.8646.5480.63222forward

Expression of CNT30338445

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MTRRTLRWRAPSCPSPARTAARRRTRTAPCAPARSCSTGCPARAWSPRPAPP*

>peptide 2 (50 aa)
MAAILTMALANFFSHDAANFALARTILPVSGEDSSASSDANSTLRASTFL*

>peptide 3 (76 aa)
MLDAVTEEQWERPMECAPESTTTSSALRPLAPNMETSVERLEDGPGRNLPVSLARDLRPSRRPAGMWKLIFPLLRR*

>peptide 4 (65 aa)
MMRLTTINQFKSVLHMHASSNGTNYSVFFSSLVDEPAALPDLALAAGLDADGGHLDHGLGELLLP*

Sequence

>CNT30338445
AATTTTTTAGAGGCCCTGGGCGGTCTTCCACTTTGGCCCTGCTAAATTGTCGACGTGCCTGGAGGAGCAGCTAAGTGTTAGCAGATATTATATTATATAA
GAAAAAGTGTGGAGAGAGGATGCTGCTACCTCTTGTAGTTTAAGTGTTAACTCTTAGCATTAATGAGTTGTTGTCACATGATCCCTATACAAAAAGATTC
TCTGTAAAAGTTAGCAGCTATCTCTACCATTGGAGACGCTCTTAGAAGAATCCCGTGCATACTCTGAATAGGAAAAGAGAATTTGCTATGTCTTTCGAGA
AGGGCGGTATTACATTTAACAAACCAAATCAACAAATACAACACTTTGCCGTATAAAGCAAAAGGGAAGAAACCAAAAGCAGCCCCATCACAGATGATGA
GGCTAACCACCATAAATCAATTCAAAAGCGTTCTTCACATGCATGCATCATCCAACGGGACGAATTATAGCGTCTTCTTTTCCAGCTTAGTTGACGAGCC
TGCAGCTCTTCCTGATCTCGCCCTCGCCGCCGGTCTTGACGCCGATGGCGGCCATCTTGACCATGGCCTTGGCGAACTTCTTCTCCCATGACGCGGCGAA
CTTTGCGTTGGCGCGCACCATCCTGCCCGTCTCCGGCGAGGACAGCAGCGCGTCGTCGGACGCGAACAGCACCCTGCGCGCCAGCACGTTCTTGTAGTAC
TGGTTGTCCAGCGCGTGCGTGGTCACCACGTCCTGCGCCACCGTGACGTCGTTGCTGCTGCCGGCGACGACGTTGGCCGGGCACCGCCGGCTCAGCAGGT
TCGCCAGCGACGCAGCGATGCTCGACGCCGTGACGGAGGAGCAGTGGGAGCGGCCGATGGAGTGCGCGCCGGAGAGCACCACCACGTCCTCGGCGCTGAG
GCCCTTGGCGCCGAACATGGAGACGAGCGTGGAGAGGTTGGAGGACGGGCCGGGCAGGAACTTGCCGGTCTCGCTGGCGAGGGACTTGCGGCCGTCGAGG
CGCCCCGCCGGCATGTGGAAGCTGATCTTTCCGTTGCTGAGGAGGTAGGAGGCGTCGCGGCCCGCGAAGGCGACGATGTCGGCGCAGGAGACCGTGCCGG
GGCAGGCCTTCTCGACGGCGCTCTTGGCCGCGTCGATTATCTAAAAGCCTCTCTGGCTGGGGTCGTTGGGAGCCCCC