Detailed information on CNT30338358


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LDE4|ERF83_ARATH, E-value = 9e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692625Eragrostis tefOryza sativa9.5550.2291.07112forward
CNT30101166Eragrostis tefOryza rufipogon12.5334.5989.12147forward
CNT30116449Eragrostis tefOryza nivara5.7122.3394.0367forward

Expression of CNT30338358

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MVVVGGDAGGGMALGSPLPTFPTIVLVSVSSR*

>peptide 2 (44 aa)
MRCALCFELNETREIQLMVKALGIRLREEEGGVALEDGEGGGWG*

>peptide 3 (40 aa)
MLIRELLKTLSGKVHIELAGRWRQIQIQEAVKKKTLEDLA*

>peptide 4 (82 aa)
MADPIAQRQSRSSVHRSRSSPSTGAGRLRSNDARDRTVEASSPSSTTEADEAQSLWHPASGTAAGRGSATRLRGGAAAVVGR*

>peptide 5 (49 aa)
MKLHSFARITRPSYRHSYRVKNSSSVTSLAQHASKPINEDKSKIASPCC*

Sequence

>CNT30338358
AGCATAATGAGCGACAAGAAATATCTCAAAAACTGTATCAAGATTCATGTTAATTCGCGAACTTCTTAAGACGCTCTCTGGTAAAGTACATATAGAACTG
GCAGGAAGATGGCGGCAGATCCAAATACAAGAGGCTGTTAAAAAGAAAACTCTCGAGGATCTAGCATGAAGCTGCACAGCTTTGCACGAATCACGCGTCC
CAGCTATCGCCATTCTTATCGCGTAAAGAATAGTAGTAGTGTTACAAGCTTAGCACAACACGCATCTAAGCCAATAAACGAAGACAAAAGCAAAATCGCT
TCTCCTTGCTGTTGATGGCGGATCCTATCGCTCAGAGGCAGAGCCGCAGCTCCGTGCACAGGTCGAGGTCGTCCCCGTCGACCGGCGCCGGGAGGTTGAG
GTCGAACGACGCGCGCGACCGGACCGTGGAGGCGTCGTCGCCGTCGTCCACGACCGAGGCCGACGAGGCGCAGTCGCTGTGGCATCCTGCGTCGGGCACC
GCCGCCGGACGCGGCAGCGCCACGCGCTTGCGAGGTGGCGCCGCCGCCGTCGTCGGACGCTGACCCCCGCGGGGCCCGCTGGAGGACTCGACGGTGGAGC
TGGAGCTGCAGGTCGGGGCGGCGGCCGGCGCTGGCGCGACGAGGGGTCGGGGCTTGAGCGGGAGCAGGTGGTGGNNNNNNNNCGCGCGCGTCTGCCTCGG
CGGAGTCGAAGGTGCCAAGCCAGACGCGCGCGCGCTTCGCCGGGTCGCGGATCTCCGCCGCGAACCGGCCCCACGGCCGCTTCCGCACGCCCCTGTACCG
CGGCGCCGCCACGGCCGCCGTGTCGCACATCGTATATATATGCTTCTTCGCTGCCTCTGAAAAACTCCTCGATGTATGCGTTGCGCGCTGTGTTTTGAGC
TGAATGAAACGCGCGAGATTCAGCTGATGGTCAAGGCGCTCGGGATTCGGCTACGAGAGGAGGAGGGCGGTGTGGCCTTGGAGGATGGGGAAGGCGGGGG
GTGGGGGTAGAAGAAGGCAGGCGCGGTGATGGTGGTGGTGGGAGGAGACGCGGGAGGAGGGATGGCTTTGGGCAGCCCGCTTCCCACCTTCCCCACTATC
GTCCTCGTCTCCGTCTCCTCCCGCTGATGCCGTTTACTTATCTTTTCCGGTTTGATTTTCGCTTTCGTCGCCG