Detailed information on CNT30338251


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LNG5|PPP7L_ARATH, E-value = 7e-21

BLAST vs NONCODE:
NONPOPT001921, E-value = 2e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3094286Eragrostis tefSolanum tuberosum52.0859.7483.7276forward
CNT30553142Eragrostis tefOryza glaberrima20.7538.0694.55110forward
CNT30206348Eragrostis tefHelianthus annuus30.9421.9585.37164forward
CNT30595937Eragrostis tefOryza meridionalis53.5867.7892.25284forward
CNT30100650Eragrostis tefOryza rufipogon65.2848.5390.46346forward

Expression of CNT30338251

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRIQEICNSVSTKSKRDTSVIHAPTLSIFPWI*

>peptide 2 (33 aa)
MIAPQKKKKFSGYLILYARRRHIVSKLCLPLST*

>peptide 3 (35 aa)
MHNILSSIRAATGRQLKHSVKTFHSRTLNRRLHSS*

Sequence

>CNT30338251
ATGCGTATTCAGGAAATCTGTAACTCTGTCAGCACCAAAAGTAAACGAGACACCTCTGTCATTCATGCCCCAACCTTGAGTATCTTTCCCTGGATCTGAC
CAAAGCAAGTCACATAGTAGACCCTGATCTGGCACATCAGTTGGGCGTGGCAAGTTCTTGATCTCCTCCAAGTGTTTTAAGTCAGGAGAGAGTCCACCAT
GCATGCATAATATCTTATCATCAATTAGAGCAGCCACAGGTAGACAGTTAAAACATTCAGTGAAGACCTTCCATAGCCGCACATTAAATCGACGTTTGCA
TTCGTCATAAAATCCATATATTCTGTTTATTGAGGCACATTCATGATTGCCCCTCAGAAGAAAAAAAAATTCTCCGGGTACTTGATTTTGTATGCAAGAA
GAAGGCATATAGTCTCCAAACTCTGTTTGCCTCTATCAACATAATCACCTAAGAACAGATAATTGGCATCTGGAGGAAAGCCTCCGTATTCAAAAAGCCT
TAACAAATCACTGTATTGACCATGGATGTC