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Detailed information on CNT30337932


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 4e-97

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Cynara cardunculusSetaria italica27.6830.2781.5227forward
CNT30530404Cynara cardunculusEucalyptus grandis29.5168.1783.47242forward
CNT30316147Cynara cardunculusCorylus avellana32.836.1184.76269forward
CNT30375121Cynara cardunculusArabidopsis thaliana2022.4479.88164forward
CNT30729539Cynara cardunculusCorchorus capsularis40.8549.8580.6335forward
CNT30177095Cynara cardunculusSecale cereale21.8312.9184.92179forward
CNT30289293Cynara cardunculusTriticum aestivum16.143.4280.3132forward
CNT30223417Cynara cardunculusHordeum vulgare2072.2584.15164forward
CNT3084565Cynara cardunculusVigna radiata42.9320.8377.84352forward
CNT30539234Cynara cardunculusBrassica napus42.0737.781.74345forward
CNT30261302Cynara cardunculusBrassica rapa41.2265.3881.66338forward
CNT30455867Cynara cardunculusSaccharum spontaneum29.8837.483.27245forward
CNT30131528Cynara cardunculusLolium perenne30.7354.6682.54252forward
CNT30231964Cynara cardunculusAnanas comosus23.0515.4983.07189forward
CNT30653881Cynara cardunculusRosa chinensis40.8531.3780335forward
CNT30718631Cynara cardunculusMalus domestica golden45.4964.9879.89373forward
CNT30339698Cynara cardunculusEragrostis tef30.7320.482.14252forward
CNT30477892Cynara cardunculusArabidopsis halleri25.8519.8183.96212forward
CNT30570592Cynara cardunculusVitis vinifera26.8368.1186.36220forward
CNT30645151Cynara cardunculusCannabis sativa34.3929.5984.04282forward
CNT30105598Cynara cardunculusOryza longistaminata21.9526.1281.11180forward
CNT30574680Cynara cardunculusOryza barthii30.7327.5180.16252forward
CNT30580197Cynara cardunculusEchinochloa crusgalli30.7330.5881.75252forward
CNT30499107Cynara cardunculusDigitaria exilis27.9358.5780.79229forward
CNT30115589Cynara cardunculusOryza nivara30.7317.6680.16252forward
CNT30604168Cynara cardunculusOryza punctata28.4184.4283.26233forward
CNT30550386Cynara cardunculusOryza brachyantha15.9847.6483.21131forward
CNT3064271Cynara cardunculusSelaginella moellendorffii27.9341.6480.35229forward

Expression of CNT30337932

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MMHDVILIPSKEIIDNNHAVSSSDQAVNEMTSDETCPAGDHYP*

>peptide 2 (38 aa)
QSSQFCPSNLPNFTSKLKQPTRIRSSTTTVGLESHKSR*

Sequence

>CNT30337932
CAATCATCCCAATTTTGCCCTTCCAATCTTCCCAATTTTACTAGTAAATTAAAACAGCCCACAAGAATTAGATCTTCAACTACAACCGTAGGATTAGAGT
CCCACAAATCACGATAAAAGGCGTTGAATCACCTGCCAGATCTGGCGTCAACGCATTACGCTGATCTCATACCACTATAAATTTACCAGATTTGCAGCGC
ATTAGTCGGCGGGTTTCCGGTAACGGAAAGACCAAAGGAAAAAAAACAAGAAAACAAGTTACCAAGTTGGAGAAAGAAACTCACCAATTGGATTGACATT
GCCCCAGTAAGTTTCGACTTGAGGATGTTGAAGGGGATCACCGTAGACCTCACTGGTGCTCGTTAGCAAGAACCGCGCACCAACCCTCTTCGCCAACCCT
AACATGTTGAGTGTCCCCACCACATTCGATATGATTGTCTTGACGGGGTTGTATTTGTAGTGAACAGGGGAAGCAGGACAAGCAAGGTGATAGATCTGAT
CCACTTCGAGTAGTAACGGCTCGACAACGTCGTGACGAATAAGCTCAAATCTAGGGTTTCCAAAATGATGCATGACGTTATCCTTATTCCCAGTAAAGAA
ATTATCGACAACAATCACGCTGTCTCCTCTAGCGATCAAGCGGTCAACGAGATGACTTCCGACGAAACCTGCCCCGCCGGTGACCACTATCCTTAAGCCC
TTGCGTTTCAGACCCAAAGGAACCTTTCCACCAGAACTGATAGAGCCAAAGCCGGGACGATAAACCGGTTGTGGCGGGTTCATGATTTGGGCAAGTTGAG
AGACGGAGTAGGCATCATGG