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Detailed information on CNT30337803


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30407149Cynara cardunculusBeta vulgaris2.921.2294.2352forward

Expression of CNT30337803

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MSQAEDLVDVRVPAFFFHAFPRGLEKAEINRISLISLRKSVKFFNVRAKLGYLGE*

>peptide 2 (29 aa)
MVLLLLNGRWYVKRSSFLMFNCVVDLILF*

>peptide 3 (33 aa)
MYNHPINKIYFSGYVIQSFKLLTFRFNLLXRYE*

>peptide 4 (34 aa)
CIEVRVSSIFVPALCDPLCINIDPSIDQYTHLQI*

>peptide 5 (47 aa)
MLAENWISSAVSFGSEFFEEVGWHTYGHRYIIMCHEFLDPHDFDEDP*

Sequence

>CNT30337803
GTTGTATAGAAGTTCGGGTTTCTTCGATATTTGTGCCTGCCCTTTGCGACCCACTCTGTATAAATATAGATCCATCGATTGATCAATACACACACCTTCA
GATTTAAACAACGATCACTTTTGAACAGTCGATTTGAGATTTTTCTGAATCGTACATCTTGATCATGGCCGAAAACGATGGTGCTGTTACTACTGAACGG
GAGGTGGTACGTAAAACGTTCGTCTTTTCTGATGTTTAATTGTGTGGTTGATTTGATTTTGTTTTAATTTTAGGCGTTTGATGTTGTTTCAATTGGTTTC
TTGTGCAAGAAGATATAACTTGTTGCTGCTTTCGAACTGATTACAGATTACTGCAGTTTGTGATTAGTAATTGAAAAAGTGATGAGAGATTAGTTCGATT
CTACAGTTTCAATCCTCTAAAAGTCGCCAATAAACCTAAATAACGAGGACGATATCGATTTTTATTAATATGGAAATTATTTATCTTAATCACAAATTTT
TTTGATAGTAATTGAGCCACCAATTTGAAATATATTCCTTTCCGAAATGAATCAATGATGATGCTATGTGTCTAATATAATCCGATCGCATGCTTGCTGA
AAATTGGATTTCATCAGCAGTTTCATTTGGATCTGAATTCTTTGAAGAGGTGGGATGGCATACCTACGGACACAGATATATAATTATGTGTCATGAATTT
TTAGACCCTCATGATTTTGATGAAGATCCTTAGTGTGTTAGAAACTGTAATTCTAGTGAGATTGATCATACATTAAATTGCTAGGATAGGGAAAAGACTA
CTTATATATGCATGCAAGATGGGTTACTGTTAATCTCCATGAAAATATTTACAAGAAGAAAGAAAAGATTTAGAGAGAACAACAAATTGATTAATTGACT
ATTACAGAGCTAACTAGCAACTACCTCTTTGCTATCAATCAATAATTCTTCATTGGGTTATTTCAGGCATTAGAGTATAGACTTGCATACAAGTACATGA
GTCAGGCAGAAGATCTAGTAGATGTTCGAGTACCAGCCTTTTTTTTTCATGCTTTTCCCCGAGGTCTGGAGAAAGCTGAAATCAATAGGATTTCCCTAAT
CTCCCTTAGGAAGAGCGTGAAATTCTTTAACGTACGAGCTAAATTGGGCTATTTAGGAGAATAACCTTCTTGTATATTTTTGTTAATGCATGGCATTTGA
CAGATTTTGACGCATTCTTGTATCAGGAAGAGACATTCTTTGTTAGGCAAAAGCATTCTTAAACCAATCAGAAGGTCATTCATTTAAAATAATCTGTCAA
AAGGTTATCCTCCTAAATAACCCTTCATAAATTAGACAATCCCCTACACACTCTTGGCCTTTATTATGCCCACACATATGGTGAAAATGGGATATCAGCT
GTGCTGGGATGAAATATAGCCATGCATGAAATGATGAAAAATTATGTGTTAGTACCTTGACCAACTCCAGGTCCAATAGAAGCAAGCCCTACAGCCAATC
CAGCAACATTTTTGTTACTTGACCAACCATCAGGAGAAGCAAATACAACGGGTACGGAGCGATCTCATTTTTTTCATCGGGTCCGGGTACATATTGAAAT
GTACAATCATCCAATAAATAAGATTTACTTTTCCGGATATGTAATACAAAGTTTTAAACTTCTTACTTTCCGATTCAATCTGCTCTKAAGATACGAATAA
AAAAATCCGAAAGTTCTTCTTTGTGGCGATAATACCAAAATATCAAGTTGGCTCATTCGAAGTTCGTAGTTACTTCGACTAGATGAATCCCGGCTA