« Back to Cynara cardunculus search


Detailed information on CNT30337665


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30569543Cynara cardunculusActinidia chinensis56.486.9283.38331reverse complement

Expression of CNT30337665

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MILHSRKEQGEDSTGYGGKGQYVFICLCIEKGCVRYAGNGGKG*

>peptide 2 (35 aa)
MVAKDSMFSFACVSRKDAFGMREMVAKDEYDTFSVV

>peptide 3 (41 aa)
RDMMGLIVGCTYLRNPEAVGKALMLLLLFRYNTAATPINLQ*

Sequence

>CNT30337665
AAAGGGATATGATGGGTTTAATTGTTGGCTGCACATATTTAAGGAATCCAGAGGCTGTTGGTAAGGCTTTAATGCTTCTCCTTCTATTTCGTTATAACAC
AGCAGCGACACCAATAAATTTGCAGTAAAGGATTGAATCTCATTTCCTATGTACAAGCGTTAAGAAAAGTAAACATAAGTATTAGAGACTGTTTACCCCA
AGATTGATTGATTAGTGATCATGACTTGAAGCGGGTTCAAAAGATCAACTTTATGGGGTTTTTACTATCTATTAYCATATGTATTATCCGAAAGTAGATT
GATAAAAATGAGTGGATAGCTAGGAACACTAAGGTACACAAAGGATTYGTAATAGAGATTATGTAAGTCTATTTTTCTGCGTATAAAAAGAATTCTAATT
GGGGCTTTAAATTGGTAGAAATGATCAAGAAATGATTTTGCACAGCCGCAAAGAACAAGGAGAGGATTCAACAGGATATGGTGGCAAAGGACAGTATGTT
TTCATTTGCTTGTGTATCGAGAAAGGATGCGTTCGGTATGCGGGAAATGGTGGCAAAGGATGAATATGACACGTTCAGTGTCGTCC