Detailed information on CNT30337438


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019366Cynara cardunculusCitrullus lanatus82.9637.7992.7370reverse complement
CNT30592668Cynara cardunculusMusa acuminata36.325.0489.51162forward
CNT30358835Cynara cardunculusLactuca sativa100.2221.0897.09447forward
CNT30574567Cynara cardunculusVitis vinifera35.4312.6390.51158forward

Expression of CNT30337438

Peptides detected in this lncRNA

>peptide 1 (34 aa)
TGKRGEALAEALPALLYSILRIPLRRLSGLVKDG*

>peptide 2 (80 aa)
REEGGGSCGSPARPSLFYFEDPSEEAFRTRKRRLGTRIGSVVSAVAGPSPSAEMALFLFCLFTAARNHEEGGITQKESGA*

Sequence

>CNT30337438
ACCGGGAAGAGGGGGGAGGCTCTTGCGGAAGCCCTGCCCGCCCTTCTCTATTCTATTTTGAGGATCCCTCTGAGGAGGCTTTCCGGACTCGTAAAAGACG
GCTAGGAACAAGAATAGGGTCAGTAGTCTCCGCCGTTGCAGGTCCTTCTCCTTCCGCTGAGATGGCCCTCTTTTTGTTTTGTTTGTTCACCGCGGCACGA
AATCATGAAGAAGGTGGAATAACTCAGAAAGAGAGTGGCGCCTAGCCGTTGAGAGCGTCTGTTGTCTTTGTAGAGGAACAGTACGATCTTGGACTGGCCC
CCTTCGCATGACCTAGAAAGAAAAATAAGTTTGTGCTACTATAAGGCCTCTAAACTCCTCCCTCAGGACACTGTTGCGTTGCCCATGGGGGCGGGCTAGC
CCCGACTTCCATAGGTCCTTGGTTCGACCTCCTAATGAGAATTGAG