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Detailed information on CNT30337329


BLAST search results

BLAST vs Swiss-Prot:
sp|P27491|CB27_TOBAC, E-value = 6e-75

BLAST vs NONCODE:
NONBNAT007398, E-value = 8e-64

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30544801Cynara cardunculusBrassica napus58.5634.5785.06308forward

Expression of CNT30337329

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MGPSTLTRSGPYHGLQEATCLAAVFLIETRPFP*

>peptide 2 (30 aa)
MGFKRQLAWLLSSSLKPVHSHKAQNQMEPC*

>peptide 3 (29 aa)
MAHLQWMTSSSRFLAKVSGSAESPAVSQP*

>peptide 4 (43 aa)
PNGQDALGMNQTWVAQVVEPTLAEDLGSSLEPYCLTELDTISG*

Sequence

>CNT30337329
GCCCAAATGGCCAAGATGCTCTGGGCATGAACCAAACTTGGGTTGCCCAAGTAGTCGAGCCCACCCTCGCTGAAGATCTGGGCTCCAGCCTTGAACCATA
CTGCCTCACCGAACTTGACACCATTTCTGGCTAAAAGCTCAGGGAAGACGCATCCTAGAGCTCCAAGCATGGCCCATCTGCAGTGGATGACTTCAAGTTC
ACGGTTCTTGGCAAAGGTTTCGGGGTCTGCAGAAAGTCCGGCGGTGTCCCAGCCGTAGTCACCTGGGAATTCGCCGGTAAGGTAGCTTGGGGCCTCGCCG
GAGAATGGGCCCAAGTACTTTGACACGGTCTGGGCCATACCATGGGCTTCAAGAGGCAACTTGCTTGGCTGCTGTCTTCCTCATTGAAACCCGTCCATTC
CCATAAAGCTCAGAACCAGATGGAGCCATGTTGACTGCCTGCCCGGCAAAAGGGGAGGAGAAAGCCATGCTGGTGGCGGCCATTGTTGAGCTTGGATGAA
GAGAATGTGTTGACAGGAGGAGCTTG