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Detailed information on CNT3033712


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 4e-150

BLAST vs NONCODE:
NONGMAT000502, E-value = 2e-112

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379315Theobroma cacaoManihot esculenta58.4452.3483.51661forward
CNT30201346Theobroma cacaoPisum sativum59.5965.3183.23674forward
CNT30120657Theobroma cacaoCitrus clementina60.5768.5785.69685forward

Expression of CNT3033712

Peptides detected in this lncRNA

>peptide 1 (81 aa)
VPVMQNTINLYSETAYLPINHFYHHLEANKCKKLVSYRLIQADITIIAKGVKMSNTFEKMKRTKHVFILKMTKYQNQETTK*

>peptide 2 (61 aa)
MPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICILYEGLEEEMRGATVEWKENFQRAEER

>peptide 3 (53 aa)
MPSLSWILALTLSIVSELSTSRVMVLPVRVLTKICMPPRRRSTRWRVDSFWIL*

Sequence

>CNT3033712
CCGTCCCCGTCATGCAGAACACTATTAACTTATATTCAGAAACAGCATACTTGCCGATCAACCATTTTTATCATCACTTAGAAGCTAATAAATGCAAAAA
ATTGGTTTCATATAGGCTTATACAAGCAGATATCACCATTATTGCGAAGGGAGTGAAAATGTCAAACACATTTGAAAAGATGAAAAGAACGAAACATGTT
TTTATTCTAAAGATGACTAAGTACCAAAATCAAGAAACGACCAAATGATATTCTAAGAGTAAAAATAACAAGCAGTTCGTTTATCCTGAACACCAGAACA
CTTAGACATATCACAGAATAACAAGCAGAGACGCAGACAGATGACTAAAAGCTCTAATTACTAAGCACCACCGCGAAGCCGAAGGACAAGGTGAAGAGTG
GACTCCTTCTGGATGTTGTAATCCGCAAGGGTCCTGCCGTCCTCCAACTGCTTCCCGGCGAATATCAACCTCTGCTGATCCGGAGGGATCCCTTCCTTAT
CCTGGATTTTTGCCTTGACGTTATCAATTGTATCCGAACTCTCTACCTCCAGGGTAATAGTTTTCCCGGTCAAGGTTTTAACGAAAATCTGCATGCCTCC
ACGCAGCCTGAGCACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGC
TGTTGGTCCGGAGGTATGCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTGTCGATCGTGTCAGAGCTTTCGACTTCAAGAGTGATGGTCTTGCCGGTTA
GGGTTTTGACGAAGATCTGCATGCCGCCACGGAGACGGAGTACCAGGTGGAGAGTCGATTCCTTTTGGATATTGTAATCCGCAAGGGTTCGGCCGTCTTC
AAGTTGCTTGCCGGCGAAGATCAAGCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCC
ACCTCGAGGGTGATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTTGTACGAGGGATTGGAGGAGGAAATGCGAGGAGCGACGGTTGAATGGA
AAGAAAATTTTCAAAGAGCAGAAGAAAGAAG