Detailed information on CNT3033699


BLAST search results

BLAST vs Swiss-Prot:
sp|Q942D4|BURP3_ORYSJ, E-value = 3e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703016Theobroma cacaoQuercus lobata20.2949.1378.8283forward
CNT30500761Theobroma cacaoCoffea canephora7.0329.0887.7698forward
CNT30727307Theobroma cacaoCorchorus capsularis40.2940.6189.32562forward
CNT30381078Theobroma cacaoManihot esculenta39.7148.4781.23554forward
CNT3047896Theobroma cacaoPrunus dulcis7.5321.4781.9105forward
CNT30559861Theobroma cacaoActinidia chinensis17.4920.7879.92244forward
CNT30570403Theobroma cacaoVitis vinifera15.3427.9779.44214forward

Expression of CNT3033699

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MAHYRFVTSHLVHSSCYCVLLFGGLFLHLRRDCVSIFPDLGSTKVNH*

>peptide 2 (34 aa)
MNCRCFFTWATSTKQIYVMVLLCCQCAVNLERNL*

>peptide 3 (54 aa)
KEEKLAKRSRLKLSGLQPRRSEGKGREGKAKERKCRERGEKSVLLTLKEPLRME*

>peptide 4 (74 aa)
MLMYLCGRLLLLWLLSRQHPPNEPCKPLLFLICGNRRQHMHNSAYGTLQICHLPSCALQLLLCTSVRGFVFAPP*

>peptide 5 (39 aa)
MVPGSTLRTWKAKCFGFHADVSVWQIATALAFVPSAPSK*

>peptide 6 (87 aa)
MQGHCCSGMHILFQKEKSNIWIIMDLSLGGCIIVNKSSWVNIYRLSLVSCVHRYSSTFATHIYGGATTRLSFSCIDVYTTSPYIDRD*

Sequence

>CNT3033699
AAAAAGAAGAAAAATTGGCTAAGAGAAGTCGGCTAAAGCTGTCAGGACTTCAACCAAGGAGAAGCGAAGGGAAGGGAAGGGAAGGGAAAGCCAAGGAAAG
GAAATGCCGTGAGAGGGGAGAAAAAAGTGTGCTGTTAACCTTGAAAGAACCTTTACGCATGGAATGAATTGCAGGTGCTTTTTCACTTGGGCTACTTCAA
CAAAACAAATTTATGTGATGGTGCTGCTTTGCTGTCAGTGTGCTGTTAACCTTGAAAGAAACCTTTAGGTGTGGAATGAATTGAAGGTGCTCTTTCACTT
GGGCTACTTCAACAAACCAAATTTATGTGACGGTGCTGCTTTACCGTCAGGCTTTTACTTGGGGATCCAAACTATGTGATCCTGAGGAAGGAAATGGCAG
ATAGGAATGGTTCCTGGCTCAACTTTAAGGACTTGGAAAGCCAAATGCTTTGGGTTCCATGCTGATGTATCTGTGTGGCAGATTGCTACTGCTTTGGCTT
TTGTCCCGTCAGCACCCTCCAAATGAACCATGTAAGCCCTTGTTGTTTCTGATTTGTGGCAATAGAAGACAGCATATGCATAATTCTGCTTATGGCACAC
TACAGATTTGTCACCTCCCATCTTGTGCACTCCAGCTGCTATTGTGTACTTCTGTTCGGGGGTTTGTTTTTGCACCTCCGTAGAGATTGCGTAAGCATTT
TTCCCGATCTTGGAAGTACTAAAGTCAATCATTGACTCTAGTGAGGTTGCACAATATTTGTCCTCTCCTTGAATTTGGGGCTGTTCACACTCCTTAATTG
TGTTCTTCATTATCTCAGCTTCCGCTGATCCAGGTTTCACTGAAAACTTTTTCAAAATTTCTGGCAACTTGTCAGATGAAAATGGTATCTTTTGGGCAAT
TTGGCGAGGTAAGAAAGTTGCCGTCTCTGTATTTTCAGTGAAATGCAGGGTCATTGTTGCTCTGGGATGCATATCCTTTTCCAGAAAGAAAAGAGCAACA
TTTGGATCATCATGGACTTGAGTCTCGGTGGCTGCATAATTGTAAATAAATCCTCCTGGGTTAACATATACCGGCTTTCCCTTGTGTCCTGTGTTCACAG
ATACTCCTCCACCTTTGCCACCCACATTTACGGAGGTGCCACCACCCGGCTTTCCTTTTCCTGTATTGACGTTTACACCACCTCCCCCTACATTGACAGA
GATTAACAGCCTGCTTCACTGATTACATGATTGTGTGCTCTGTTAGACTATTAAGCCAATCCTATAGGGAAAAGAAAGGTGTGATACTTCTTAAGTCCTC
ACTTCCCTGAACCTCTCAAGGTAAGAGTTTTTTCTCATAAACCATGGTGGTGGGGGCACAAAACTAGCTGCTTCCTTTTGGTCAGTAAAAATGAC