Detailed information on CNT30336936


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674392Cynara cardunculusSetaria viridis6.322.5591.9462reverse complement
CNT30554621Cynara cardunculusOryza glaberrima6.6130.2396.9265reverse complement
CNT3068221Cynara cardunculusLeersia perrieri6.6122.1892.3165forward
CNT30687322Cynara cardunculusTriticum urartu6.6131.5596.9265reverse complement
CNT30370808Cynara cardunculusOryza glumipatula6.6129.9596.9265reverse complement
CNT30149782Cynara cardunculusBrachypodium distachyon6.6131.196.9265forward
CNT30603500Cynara cardunculusOryza punctata6.324.1293.5562reverse complement

Expression of CNT30336936

Peptides detected in this lncRNA

>peptide 1 (30 aa)
HHFHYGLFPSLRVFNLYMILGRLVLKGRNG*

>peptide 2 (31 aa)
MATPITEPQPVRFAPPSTTSSVSVGFEQQQS*

>peptide 3 (48 aa)
MDEEKKKKRERRTKRMVSFSCSEEKSSTCRSRCQASTPLFLELQSLPV*

>peptide 4 (50 aa)
MKKKRKRERGEQRGWFLSLAVKRNPLLVEAAAKHRPPFFWSYNRCRFDPP*

>peptide 5 (71 aa)
MTSSSNRREDSSLVVSVHLLAAAKTSSNNMRKDSSLVVSVHLLAAATTSSSRRPLRTVFRCCVDGCSVGFL*

>peptide 6 (78 aa)
MRVRFPLSPQNGHPHHRAATRPLCTPLDDFFGFGRFRAAAVVKTAALLSPFIFSQQQRHRATTGVKTAALLSPFIFSQ*

Sequence

>CNT30336936
CATCATTTCCATTATGGTTTATTTCCTTCCCTGAGAGTCTTTAACCTCTACATGATTTTGGGAAGATTAGTCTTGAAGGGGAGAAATGGATGAAGAAAAA
AAGAAAAAGAGAGAGAGGAGAACAAAGAGGATGGTTTCTTTCTCTTGCAGTGAAGAGAAATCCTCTACTTGTAGAAGCCGCTGCCAAGCATCGACCCCCC
TTTTTTTGGAGCTACAATCGCTGCCGGTTTGATCCTCCTTAGCGCCGCTCGATCAGTGAACTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAA
CCTCCTGGCTTTTGCCAAGGAGAAGATGCGGGTTCGATTCCCGCTATCCCCCCAAAATGGCCACCCCCATCACCGAGCCGCAACCCGTCCGCTTTGCACC
CCCCTCGACGACTTCTTCGGTTTCGGTCGGTTTCGAGCAGCAGCAGTCGTGAAGACAGCAGCCTTGCTGTCTCCGTTCATCTTCTCGCAGCAGCAAAGAC
ATCGAGCAACAACAGGCGTAAAGACAGCAGCCTTGCTGTCTCCGTTCATCTTTTCGCAGTAGCAATGACATCGAGCAGCAACAGGCGTGAAGACAGCAGC
CTTGTTGTCTCCGTTCATCTTCTCGCAGCAGCAAAGACATCGAGCAACAACATGCGTAAAGACAGTAGCCTTGTTGTCTCCGTCCATCTTCTCGCAGCAG
CAACGACATCGAGCAGCAGACGCCCCCTACGCACCGTTTTTCGCTGCTGCGTCGACGGATGTAGTGTCGGGTTCCTTTAGCGGTGGGGCTTCAAAGGGTT
GAGAGGAGCATTGGTTCGGGAAAGGCTCTTTTGTAGTTATAGCATTTGTTTTCTTTGAGCATTGCTTTTTTTTATATTGCGATATTTTGGAGATAGATAA
AAACACCCGTCTTTAATCTAGATATAGAATAATCTAGATTAGTAGGTTGTTATTTATCTTCTCAGTAGCTGATTTGTAAACGCT