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Detailed information on CNT30336889


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1KXS1|RK16_HELAN, E-value = 2e-81

BLAST vs NONCODE:
NONCQUT006130, E-value = 1e-97

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690836Cynara cardunculusOryza sativa47.1455.7285.4404forward
CNT30641762Cynara cardunculusNymphaea colorata37.819.3387.04324forward
CNT30405603Cynara cardunculusBeta vulgaris52.2858.6487.72448forward
CNT30198977Cynara cardunculusPisum sativum34.0715.6984.25292forward
CNT30185636Cynara cardunculusSecale cereale30.8117.0386.36264forward
CNT30293259Cynara cardunculusTriticum aestivum40.4924.6686.46347forward
CNT30540371Cynara cardunculusBrassica napus46.2165.5685.61396forward
CNT30555950Cynara cardunculusOryza glaberrima40.4922.987.03347forward
CNT30442098Cynara cardunculusAegilops tauschii40.4952.4285.88347forward
CNT30243771Cynara cardunculusAvena sativa39.6729.4985.88340forward
CNT30656274Cynara cardunculusTriticum dicoccoides29.645186.61254forward
CNT3060130Cynara cardunculusArabidopsis lyrata46.2143.1886.36396forward
CNT3083474Cynara cardunculusBrassica juncea46.2111.8685.61396forward
CNT30447455Cynara cardunculusSaccharum spontaneum40.6148.4787.93348forward
CNT30134355Cynara cardunculusLolium perenne42.5914.585.21365forward
CNT30229832Cynara cardunculusAnanas comosus38.9728.486.23334forward
CNT30655378Cynara cardunculusRosa chinensis51.9329.9789.44445forward
CNT30689030Cynara cardunculusTriticum urartu40.497.6685.88347forward
CNT30357951Cynara cardunculusLactuca sativa55.8950.996.24479forward
CNT30411335Cynara cardunculusPapaver somniferum51.8151.4587.16444forward
CNT30574575Cynara cardunculusVitis vinifera53.4430.0190.61458forward
CNT30585636Cynara cardunculusEchinochloa crusgalli37.815.6486.42324forward
CNT30604550Cynara cardunculusOryza punctata31.1612.1984.64267forward
CNT30550799Cynara cardunculusOryza brachyantha28.8218.3484.21247forward
CNT30724130Cynara cardunculusLupinus angustifolius21.755.6989.25186forward

Expression of CNT30336889

Peptides detected in this lncRNA

>peptide 1 (37 aa)
VFDHXNNNVTNKSISTIDSSYDSNTHQFSIPAVICYI*

>peptide 2 (91 aa)
MITLIRYFLHSSSMLFTESGSFGVIHSNFIKRLIEFLFNPIELQFFIFLLNKKEKEETNLSVFVPSLDRMEMQIKVYYSPSINIQTLMPNTP

>peptide 3 (41 aa)
ASLITXTITSPIRAYQRLIAPMIRIHINSRSPLLSATFKWV*

>peptide 4 (51 aa)
MGLRLNHIIFFYLFFTIQRSNKKRNISKKETCTRYFFFTQGLFLFYPEMMN*

Sequence

>CNT30336889
GCGTCTTTGATCACADCAACAATAACGTCACCAATAAGAGCATATCAACGATTGATAGCTCCTATGATTCGAATACACATCAATTCTCGATCCCCGCTGT
TATCTGCTACATTTAAATGGGTCTGAGGTTGAATCATATCATTTTTTTTTATCTGTTTTTTACAATACAAAGGTCGAATAAAAAAAGAAATATATCTAAA
AAAGAAACCTGCACCCGCTATTTTTTTTTTACCCAAGGCTTATTTCTTTTTTATCCCGAAATGATGAATTGAGCTCGTATAGGCATTTTGGACGCTGCTA
TTGAAATATCCCTTCTAGCTATATTTTATGTTACTCCACCCATTTCATAAAGGATTCGACCTGGTTTAACAACAGCTACTCAATATTCGAGAGAGCCTTT
ACCTGAACCCATACGTGTTTCTGCGGGTCTTACTGTAACTGGTTTATCTGGAAATATACGGACCCATATTTTTCCACCACGACGTGCATTTCGTGTCATT
GCTCGTCGACCTGCTTCTATTTGTCTAGATGTGATCCAAGCGAGTTCAAGTGCCTAAAGAGCGTATTTATCAAAACAAATATGATTACCTTGATAAGATA
TTTCCTTCATTCTTCCTCTATGTTGTTTACGGAATCTGGTTCTTTTGGGGTTATACATAGCAATTTTATCAAAAGATTAATTGAATTTTTATTCAACCCT
ATAGAATTACAATTTTTCATTTTTTTATTGAACAAAAAAGAAAAAGAAGAAACGAATTTATCAGTTTTTGTTCCATCGCTGGATAGAATGGAAATGCAAA
TAAAGGTTTATTACTCCCCATCTATAAATATCCAAACTTTGATGCCTAATACCCCAT