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Detailed information on CNT30336888


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1KXS1|RK16_HELAN, E-value = 2e-75

BLAST vs NONCODE:
NONCQUT006130, E-value = 2e-123

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516020Cynara cardunculusJuglans regia3.1639.6185.15101reverse complement
CNT30503443Cynara cardunculusNicotiana attenuata9.9293.7988.01317forward
CNT3048583Cynara cardunculusPrunus dulcis11.8359.987.3378forward
CNT30637715Cynara cardunculusCapsicum annuum3.7337.6693.28119reverse complement
CNT30220592Cynara cardunculusHordeum vulgare4.1353.6687.12132forward
CNT30559437Cynara cardunculusActinidia chinensis3.1324.5788100reverse complement
CNT3086712Cynara cardunculusVigna radiata6.6771.4888.73213forward
CNT30509957Cynara cardunculusSolanum lycopersicum9.0222.7187.15288forward
CNT30311863Cynara cardunculusCamelina sativa20.9140.9182.93668forward
CNT30598237Cynara cardunculusFraxinus excelsior7.2937.8985.84233forward
CNT3018219Cynara cardunculusZea mays3.0429.1384.5497forward
CNT30713541Cynara cardunculusMalus domestica golden2.4736.7493.6779reverse complement
CNT30620547Cynara cardunculusCajanus cajan6.2363.3886.43199forward
CNT3025585Cynara cardunculusPopulus trichocarpa11.6888.682.04373forward
CNT30118482Cynara cardunculusCitrus clementina2.531.7586.2580reverse complement

Expression of CNT30336888

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLSFLFTELNSFCKFICNSSIPRGRLSINIFGNPI*

>peptide 2 (37 aa)
VFDHXNNNVTNKSISTIDSSYDSNTHQFSIPAVICYI*

>peptide 3 (34 aa)
MFLSIMDNNSMAHHCGYNGRCSGPGYYYFFFCFCV

>peptide 4 (34 aa)
MTRSIIAFCMSSKISSRAKFCQFVAYHTICYINR*

>peptide 5 (29 aa)
MELLILESIFLVFIGSKLFIFCSMSRSIK*

>peptide 6 (30 aa)
MITLIRYFLHSSSMLFTESGSFGVIVDGLF*

>peptide 7 (91 aa)
MGLVFYTNPQKTNESHTKHSNFIKRLIEFLFNPIELQFFIFLLNKKEKEETNLSVFVPSLDRMEMQIKVYYSPSINIQTLMPNTPWIVRTI*

>peptide 8 (55 aa)
MTHRPYILELYIINILFLSFSHPSIYPYHFFFVSIDNLKADFFNEKRFQSLQQYV*

>peptide 9 (51 aa)
MGLRLNHIIFFYLFFTIQRSNKKRNISKKETCTRYFFFTQGLFLFYPEMMN*

>peptide 10 (49 aa)
MKKDFSRYNNMYEQYIISWLVLWIKIIRSDELVITSIVICLYYGAGFLY*

>peptide 11 (47 aa)
MCNSLDARRCFHIFLYIILDIISYFLIFLQTFRIIFRMCEPKGMYQV*

>peptide 12 (42 aa)
MNLSFILHILSYWIHSNLEIQENKVFANIYFFNLYFSSIISS*

>peptide 13 (41 aa)
ASLITXTITSPIRAYQRLIAPMIRIHINSRSPLLSATFKWV*

>peptide 14 (38 aa)
MNQSNSFSLESFKFTGSNVHIASYFMVRSQFYNGAINS*

Sequence

>CNT30336888
GCGTCTTTGATCACADCAACAATAACGTCACCAATAAGAGCATATCAACGATTGATAGCTCCTATGATTCGAATACACATCAATTCTCGATCCCCGCTGT
TATCTGCTACATTTAAATGGGTCTGAGGTTGAATCATATCATTTTTTTTTATCTGTTTTTTACAATACAAAGGTCGAATAAAAAAAGAAATATATCTAAA
AAAGAAACCTGCACCCGCTATTTTTTTTTTACCCAAGGCTTATTTCTTTTTTATCCCGAAATGATGAATTGAGCTCGTATAGGCATTTTGGACGCTGCTA
TTGAAATATCCCTTCTAGCTATATTTTATGTTACTCCACCCATTTCATAAAGGATTCGACCTGGTTTAACAACAGCTACTCAATATTCGAGAGAGCCTTT
ACCTGAACCCATACGTGTTTCTGCGGGTCTTACTGTAACTGGTTTATCTGGAAATATACGGACCCATATTTTTCCACCACGACGTGCATTTCGTGTCATT
GCTCGTCGACCTGCTTCTATTTGTCTAGATGTGATCCAAGCGAGTTCAAGTGCCTAAAGAGCGTATTTATCAAAACAAATATGATTACCTTGATAAGATA
TTTCCTTCATTCTTCCTCTATGTTGTTTACGGAATCTGGTTCTTTTGGGGTTATAGTTGATGGTTTGTTTTGAATTCCGTCTCTACTACAGAACCAGGCG
TAAGAGTTTCTTCTCATCCAGCTCCTCGCRAATAAAATGAATTCAAATTAAAGATTTTGAATTCAGATATAATTTGAATTAAGATACACATGTATTTGAT
AAATAACATACTGAATCATAGATTTAATTTAATCTAGATCAAATCTATTATTAATTTGTATATCTTGTTTGTATAGATAACTAAATATATTAAATAACTA
TTTTTTTCTTATATTTATATATATGGTTTTTAGAATGTTAAAATGAATCTTTCTTTTATTTTACACATTTTATCGTATTGGATTCACTCAAATTTAGAAA
TCCAAGAAAATAAAGTTTTCGCGAATATTTACTTTTTCAATTTATATTTCAGTTCTATCATTAGTTCATAACTTTTCCGAATAGATAAATTGGTCTCTGG
TCGGTTCCGCCATCCTGATCAATGAATCAATCGAATTCATTTTCACTAGAATCTTTTAAATTCACAGGTTCCAACGTTCACATCGCTTCTTACTTTATGG
TTAGGTCCCAATTCTACAATGGAGCTATTAATTCTTGAGTCGATATTCTTAGTCTTTATTGGCTCGAAGCTCTTTATTTTTTGTTCGATGAGTAGATCCA
TTAAATGATGAATCCATATTGATGCTTTATTACACAGCTTTTTTATGAGATGACTCATAGACCTTACATATTGGAATTATATATCATCAATATTCTTTTT
CTTTCTTTCTCTCATCCTTCCATTTATCCATACCATTTTTTTTTTGTTTCGATTGACAACTTAAAAGCAGATTTTTTTAATGAAAAAAGATTTCAGTCGC
TACAACAATATGTATGAACAATATATCATATCTTGGCTAGTTCTTTGGATCAAGATAATACGAAGTGATGAGTTGGTTATTACTTCTATAGTTATTTGTT
TATACTATGGGGCTGGTTTTTTATACTAACCCTCAAAAAACCAACGAGTCACACACTAAGCATAGCAATTTTATCAAAAGATTAATTGAATTTTTATTCA
ACCCTATAGAATTACAATTTTTCATTTTTTTATTGAACAAAAAAGAAAAAGAAGAAACGAATTTATCAGTTTTTGTTCCATCGCTGGATAGAATGGAAAT
GCAAATAAAGGTTTATTACTCCCCATCTATAAATATCCAAACTTTGATGCCTAATACCCCATGGATCGTTCGAACTATATAGGAACAATAATCAATTTTA
GCTCRAATGGTTTGTAGTGGAACCCTACTCTCTCAGATCCATTCAACACACGCAATTTCTTTTCCGTCAATATGTTCTGCAATTTGCACTTGAATTCCTT
TTGTATCTGCTTGTTCAGTTAATTCTATAGCCTTTTCATTGCTTTGCGAAAAGAAACTCTATTTTTTAATTGGCCAGCTATAAATTCTGCAAGAATATTA
GGGTTTCCATAAGGCTTTTCAATTCGTGTGATAGCAATGTTAAGTTTTCTATTTACAGAATTAAATTCTTTTTGTAAATTCATCTGTAATTCTTCGATTC
CTCGGGGTCGGCTTTCAATTAATATTTTTGGAAATCCCATATAGATTATGATTTGGATCAGGTCGATTCTTTTTTGAATCTCTATATGTGCAATTCCCTC
GACGCCAGAAGATGTTTTCATATTTTTTTGTACATAATTCTTGATATAATTTCTTATTTTTTGATCTTCTTGCAGACCTTCAGAATAATTTTTAGGATGT
GCGAACCAAAGGGAATGTACCAAGTCTGAAACCAATTGGATTTATTTTTTGTCTCATGTTCCCCCATTACTATATATATCATAATACGACATAGTTGTAT
GTTTTTTTTTGCATTTTGGTTTTTGTGACCATCTAATAGAGTCGRTATCTATATATTCATCTAAGGATATATCTTTTATTACAATAGTTATATGGCAGGT
AGGTTTTTGTGTCGGATAACTACGCCCTCGACCTCGAGGTTTTAATCTCTTAACGGTAGTACCCTCATTGACTTCAGCTTTACTAATGACTAAATTTGTT
TCATTCGAACCCATATTGAAACTAGCATTTGTTGTCGCAGAATAAACTAATTTAAAAATGGGATAACATGCTCGATAACGCATGAGTTCTAATATAATAA
GTGTTTCTTCGTAGGACTGTCCACGAATTTTGATCAATTACTCTTCGCGCTTTGTGAGCAGACATAGATATATGTTGACCTAAAGCGTATACTTCTGTTG
TTCTCTTATTTAACATAAAGTTTGCCTCCTACTAATTAATGATAAATATCTATATATTATAGATATTATTAACGTTTCTTTAATGACGAGATCTATTATC
GCTTTTTGCATGTCCTCGAAAATTTCAAGTAGGGCCAAATTCTGTCAATTTGTGGCCTACCATACGATCTGTTATATAAATAGGTAAATGTTCCTTTCCA
TTATGGATAACAATAGTATGGCCCACCATTGTGGGTATAATGGTAGATGCTCGGGACCAGGTTATTATTATTTCTTTTTCTGCTTTTGTGTTAA