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Detailed information on CNT30336835


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618679Cynara cardunculusSesamum indicum11.421.2688.7371reverse complement
CNT30632354Cynara cardunculusVigna unguiculata23.4310.0883.56146forward
CNT30201897Cynara cardunculusPisum sativum43.3464.5982.59270forward
CNT30543576Cynara cardunculusBrassica napus48.3126.2785.71301forward
CNT30655369Cynara cardunculusRosa chinensis47.3510.2185.76295forward
CNT30215737Cynara cardunculusHelianthus annuus10.5921.6493.9466forward
CNT30357898Cynara cardunculusLactuca sativa22.637.0697.16141forward
CNT30152830Cynara cardunculusPrunus persica42.223.7584.03263forward
CNT30421666Cynara cardunculusPapaver somniferum23.1127.1284.03144forward
CNT3035458Cynara cardunculusCucumis melo47.6716.1185.19297forward

Expression of CNT30336835

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MYESFVYVHRKDSLHANQPILCMGLCDGWNKDTFGYGFKCGK*

>peptide 2 (42 aa)
MNHLYMFIEKILFTPTSLSSVWAYVMVGTKTHLVMDSNVANK*

Sequence

>CNT30336835
AAATATTCAGTTCTTACAAATAAATACTCAATACCCAAGTAGGCTTATAAAATAGATCGTGATATGATCAATTGCTTTCTGGGTCGTCTCAAACCTTATG
ATTGGTATTATCCCCAAAAGTCTTAGAGACCTTTTATAAATACACATAAAGGATTTACTTGTTACTAATATAGTCTTTGTTCTTCTTTAGACCCTTTTTT
CACTCCGATAGTATCGTAGATTGCGTTAATGCAGAGGAAATGAATGCATTTGTATACTAGTAAATTCAATTTGAAGTTAAGTGAACTAGATCTTACGGAG
ACTGCTCATGTATGAATCATTTGTATATGTTCATAGAAAAGATTCTCTTCACGCCAACCAGCCTATCCTCTGTATGGGCTTATGTGATGGTTGGAACAAA
GACACATTTGGTTATGGATTCAAATGTGGCAAATAAATAAAGGCATATATCTGCATAGACCAATCAATAGTTCAAGTCACACACTCCCATAATCCATTTT
CTCTTCAGAAAATTCCCTTCAACTATTGATGTCAAATAAAAAATATTGTGAAGTTCAAGGGAAATATCCAAATACATGTCTTATTATTTTCAATAATCCA
TACTTGTAGCAATAAAATACTAT