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Detailed information on CNT30336663


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZC0|UXS1_ARATH, E-value = 4e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318541Cynara cardunculusCorylus avellana49.0448.8386.46229forward
CNT30500451Cynara cardunculusCoffea canephora87.5838.3383.86409forward
CNT30615836Cynara cardunculusSesamum indicum34.4842.0484.47161forward
CNT3021362Cynara cardunculusCitrullus lanatus78.1656.0782.47365forward
CNT30727603Cynara cardunculusCorchorus capsularis76.2372.0682.3356forward
CNT30524728Cynara cardunculusPhaseolus vulgaris38.9733.783.52182forward
CNT30504810Cynara cardunculusNicotiana attenuata83.5159.9184.62390forward
CNT30710642Cynara cardunculusGlycine max32.5516.2682.24152forward
CNT30636701Cynara cardunculusCapsicum annuum82.4493.6785.19385forward
CNT30182233Cynara cardunculusSecale cereale34.4825.8886.34161forward
CNT30222279Cynara cardunculusHordeum vulgare32.7650.6686.27153forward
CNT30590847Cynara cardunculusMusa acuminata34.6935.4583.95162forward
CNT30510767Cynara cardunculusSolanum lycopersicum54.1830.0884.98253forward
CNT30143812Cynara cardunculusMedicago truncatula80.7330.4881.96377forward
CNT30244810Cynara cardunculusAvena sativa37.921.9184.75177forward
CNT30457014Cynara cardunculusSaccharum spontaneum34.4821.0783.85161forward
CNT30134072Cynara cardunculusLolium perenne37.924.3883.05177forward
CNT3066796Cynara cardunculusLeersia perrieri34.4841.3983.85161forward
CNT30343308Cynara cardunculusEragrostis tef41.9771.5381.12196forward
CNT30595456Cynara cardunculusOryza meridionalis32.9827.0285.06154forward
CNT30355562Cynara cardunculusLactuca sativa96.1577.0293.54449forward
CNT30424172Cynara cardunculusPapaver somniferum69.8146.783.44326forward
CNT30325711Cynara cardunculusAsparagus officinalis54.3979.6281.89254forward
CNT30579496Cynara cardunculusEchinochloa crusgalli34.6941.4383.95162forward
CNT30497454Cynara cardunculusDigitaria exilis34.2643.0184.38160forward
CNT30594668Cynara cardunculusEragrostis curvula36.450.4584.12170forward
CNT30174824Cynara cardunculusVigna angularis38.7619.0586.19181forward
CNT30723923Cynara cardunculusLupinus angustifolius43.0498.0583.08201forward

Expression of CNT30336663

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTTHKPGSAGHHHPPLLPANSHRNPSCGLIN

>peptide 2 (43 aa)
STYRIHMPPICLLLRMLKWVSINLTGACKQKPCPNSLGKSQHV*

>peptide 3 (39 aa)
MPNQLKSRVPKMMCNIFFSTSKEIINHNHIIPSCNQLIN*

Sequence

>CNT30336663
ATCCACCTATCGGATTCACATGCCCCCAATATGTCTCCTTCTGAGGATGCTCAAGTGGGTCTCCATAAACCTCACTGGTGCTTGTAAGCAAAAACCTTGC
CCCAATTCTCTTGGCAAGTCCCAACATGTTTAGGGTGCCCATAACATTTGATATGATGGTCTTGACAGGATTGAACTTGTAATGAACTGGGGAGGCAGGA
CAAGCTAAATGATAGATTTGATCAACCTCCAGTAAGATAGGCTCAACAACATCATGCCTAATCAACTCAAATCTAGGGTTCCCAAAATGATGTGCAACAT
TTTCTTTTCTACCAGTAAAGAAATTATCAATCACAATCACATCATCCCCTCTTGCAATCAACTTATCAACTAAATGACTACCCACAAACCCGGATCCGCC
GGTCACCACCACCCGCCTCTTCTTCCGGCCAATAGCCACCGGAACCCGTCCTGTGGCCTGATTAATA