Detailed information on CNT30336644


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30531932Cynara cardunculusEucalyptus grandis37.9499.8388.44571forward
CNT3020893Cynara cardunculusCitrullus lanatus43.6539.4490.26657forward
CNT30507074Cynara cardunculusNicotiana attenuata3.3224.6310050reverse complement
CNT30193918Cynara cardunculusSecale cereale12.8231.4889.64193forward
CNT30223517Cynara cardunculusHordeum vulgare17.7478.0788.76267forward
CNT30479543Cynara cardunculusArabidopsis halleri32.9695.3881.45496forward
CNT30597171Cynara cardunculusOryza meridionalis5.2533.7684.8179reverse complement
CNT30575777Cynara cardunculusOryza barthii6.4534.487.6397forward
CNT30175657Cynara cardunculusVigna angularis25.1279.4186.51378forward

Expression of CNT30336644

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MATIGRSPFRVWIFCIISVVVADGEERNE*

>peptide 2 (30 aa)
MNVFLGKCRIIHLPRRKPKVSLVGGRIEPK*

>peptide 3 (59 aa)
MIINRVNADSAMVRAASFFFDRGVSIHQCRLKVLSEPCWIVTHHTALKPNLWWILGDKVK

>peptide 4 (52 aa)
MKSVNFLSSAKNFFWLVELSTKKAKRILLSKLLPCALAPPMVDGSTTPGSTK*

>peptide 5 (50 aa)
MISIIIFIPFISSPIPPRSMNFSINSITLSLAMKFQHFFLNVHRSCSRAY*

>peptide 6 (47 aa)
MVSRALLLFWPNADFVLLLPVVEPDRLDSFACPSASHFFLIFFCTIV*

>peptide 7 (47 aa)
MKTPDRPDFTKWPPLAVPLSGSGFFASFLSSWPTGKKEMNECFFGKM*

>peptide 8 (46 aa)
MFIGVVPGHTKKRFLYSPTPSFGKKKVAPKKGKSEMVVFVVPAKRG*

>peptide 9 (35 aa)
MIRPTNEVGQLFVFGQKLFLVGRAFDKKSETYSLI*

>peptide 10 (32 aa)
SEMICFVPRLKRDILSNRRSTLINRFDFDQLN*

Sequence

>CNT30336644
AGCGAAATGATCTGTTTTGTTCCTCGGTTGAAAAGAGATATCTTGAGCAACCGAAGAAGCACTTTGATAAACAGATTTGATTTTGACCAACTCAATTAAG
GTATTAGTCTTTGTTCTATTAGACAACAAAGATCGCATTTTTTTCACTTCGTTCAAATAAAAGTTGTACCCGAACGGAATTCTTCTGTTTCTCAGTATGA
TCTCTATCATCATCTTTATTCCCTTTATCAGTTCTCCTATCCCACCTAGGTCTATGAATTTCTCTATCAATTCCATTACCTTATCCTTAGCCATGAAGTT
CCAACATTTTTTCCTGAATGTTCATAGGAGTTGTTCCAGGGCATACTAAAAAAAGGTTCTTATACAGCCCAACCCCGTCCTTTGGAAAGAAAAAGGTAGC
ACCGAAGAAAGGAAAGAGCGAGATGGTGGTTTTTGTTGTTCCCGCGAAGCGAGGATGATTCGACCAACGAATGAAGTCGGTCAACTTTTTGTCTTCGGCC
AAAAACTTTTTCTGGTTGGTCGAGCTTTCGACAAAAAAAGCGAAACGTATTCTCTTATCTAAGCTTCTTCCCTGTGCGTTAGCTCCCCCCATGGTAGATG
GTTCAACCACGCCCGGTTCCACGAAATGATTGAGAACTACGACGGGGTCGAAATGCATTTRGTTCTTTGTCTTCAATAAGTATGGCATGACCGAATAATT
CAAGGAAGGGCGCACCGCAGGGAGGGTCCTTTTAAGTGGATGACTCGTCGGGCTGTCGGAGGGGGACTTCTTTGACTTCTTTGAGAAAAAGAACTTGAAT
AACTTCGTTTTTCTGAAGGAGTCGTCATTTAGGAGGGCTATGTCATTTACAAGACTGCGTATTTTGGATGCTTGAAGGCCCCGCTGACCCAAAGTGATTT
AGAAAGATTCTTCTTTATCGATGGTGATCGGTCATGGTATCCAGAGCGTTGCTTCTTTTTTGGCCAAATGCTGATTTCGTTTTGCTTCTCCCGGTCGTCG
AGCCTGATCGACTCGACTCTTTTGCCTGCCCCTCGGCCTCACACTTTTTTTTGATCTTCTTCTGTACCATCGTTTGAATGAAGACACCCGATCGGCCCGA
CTTTACCAAATGGCCACCATTGGCCGTTCCCCTTTCCGGGTCTGGATTTTTTGCATCATTTCTGTCGTCGTGGCCGACGGGGAAGAAAGAAATGAATGAA
TGTTTTTTTGGGAAAATGTAGAATAATACACCTACCGAGACGAAAGCCAAAGGTGAGTCTAGTAGGTGGACGTATCGAACCGAAATAAGATCTAAGATTG
ACATCTTGATACACTAATTTACCATGATAATAAACAGAGTCAATGCGGACTCCGCCATGGTAAGGGCTGCTTCTTTCTTCTTTGATAGGGGGGTTTCCAT
TCACCAGTGCAGACTAAAAGTGCTCTCCGAACCGTGCTGGATAGTCACCCATCACACGGCTCTCAAACCCAACCTGTGGTGGATCCTGGGTGACAAAGTA
AAAGC