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Detailed information on CNT30336526


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30342876Cynara cardunculusEragrostis tef16.5951.1286.26182forward
CNT30360933Cynara cardunculusLactuca sativa25.0713.994.18275forward

Expression of CNT30336526

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MKKKMSWIVKSYTLLVFALLLQYSLGLNETLFYKNPTCPHFMN*

>peptide 2 (45 aa)
MVVVTNPNMEVLKKHINKKSQISVIMSHIIITINKNQNSNSSYYY*

>peptide 3 (30 aa)
MLIPHQFSLFMQYALKVRVLGRPTLLSLDK*

Sequence

>CNT30336526
ATCTATTTTGTTTGAATCAAAGATGACCTTCTTTACAAATATTTGAATGTTTGTTCTTTTAGTTGCTTTGTAAATCCTAATAGCATCCTGTAAAAATAGC
ATATTCTTCCCTTTCATTGGATTATGATTTTTATCGGTGGCTCTTCGTTTCCTTGAACTTTTTCTCTGTTGCACTTGGAAGGGAGAAACTCTAAATAAAG
GGTTGCATATTCATCAATTACATTGCATCAGCATGGTAGCAACTATTGCTGCTGCAAGTGTGGCCAAGGCGTAAACGCAATTTTGATGTATGATCACCTG
TGTGTATAAGAGAATTCTTTTATATGCATAATCTCTAGTATTTCACTATGCCACTTGATCAATTATTTATATTGTGAATTTTATACTTGTGTGTTTTTTG
TCTGTGGATATGAGTACCTCAACTGAGATTTATTACAAATCCAAATAACTAATGATTTGAATGACATGAAAAAGAAAATGAGTTGGATTGTTAAAAGCTA
TACTCTGTTGGTGTTTGCTCTGCTTCTTCAATATTCTCTTGGCTTAAATGAAACTCTATTTTACAAGAACCCCACTTGTCCACATTTCATGAACTGATCT
CCTTATTTTTTGCCCTGTTAGCTCATTTCACCCACAATAGAATTTTGCTAATTTTCATAGAATCATATGCTAATTCCCCATCAATTCAGTTTGTTTATGC
AATATGCGCTGAAGGTTCGTGTTCTGGGAAGGCCAACACTTCTCTCTTTGGATAAATAATGGTTGATGGTCGTAGTAACTAATCCCAACATGGAAGTACT
GAAAAAACATATAAACAAAAAATCTCAAATATCCGTGATCATGAGTCATATAATTATCACTATAAATAAGAACCAGAATTCCAACAGTAGTTATTACTAT
TGACATAATAGAAGTAAGTGGATCGATCAAGTATCTGAATTCTAAAGAAAAATCATTATTGATAATCCAAGACCATACATATTGATAGACGTAACTGCTA
TTTATTTGATGAATAGACAAATTCATGGAAAAAATCATGTCTATACTTAACAATAAAACGCTCTGAAAAACCCACATACGACGAAGACTTTTTGTTG