Detailed information on CNT30336357


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SPE5|SNAG_ARATH, E-value = 4e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30207105Cynara cardunculusHelianthus annuus32.2216.0986.67135reverse complement
CNT30108407Cynara cardunculusOryza longistaminata23.8724.7583100forward
CNT30151494Cynara cardunculusBrachypodium distachyon22.25.8387.193forward
CNT30101481Cynara cardunculusOryza rufipogon23.8728.0984100forward
CNT30576227Cynara cardunculusOryza barthii23.8729.6784100forward
CNT30603976Cynara cardunculusOryza punctata23.8739.2285100forward

Expression of CNT30336357

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MFYPQLAGKQDAYRAPFASASDAGCDLPHSLYSSEALL*

>peptide 2 (50 aa)
MPTEHLLQVHQMRAVTSHTHCTAQKPFCKSQQLHSICLILLPKQQQTPYA*

>peptide 3 (49 aa)
MLNSTAKAAADSICLAASHGLKSISCPFEAFSKATFAFSYFLANLYAFAA

>peptide 4 (32 aa)
MNSSLIYNVLSTASRETRCLPSTFCKCIRCGL*

Sequence

>CNT30336357
CTAGGCTGAACCGTATCATATTGTATATATAAATCATGTTTTTAAAACCAACACAGATAGAGCATACCAGAGTGCTCTATACCATGGTTTTGATGAAAGA
AATCTCAACATGAATTCAAGTTTAATATATAATGTTCTATCCACAGCTAGCAGGGAAACAAGATGCCTACCGAGCACCTTTTGCAAGTGCATCAGATGCG
GGCTGTGACCTCCCACACTCATTGTACAGCTCAGAAGCCCTTCTGTAAAAGTCAGCAACTTCATTCCATATGCTTAATTCTACTGCCAAAGCAGCAGCAG
ACTCCATATGCTTAGCAGCATCCCATGGTTTAAAGAGCATTTCTTGTCCCTTTGAAGCTTTCTCAAAGGCTACTTTTGCTTTCTCATATTTTTTGGCAAA
CCTATACGCATTCGCTGCC