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Detailed information on CNT3033611


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 5e-150

BLAST vs NONCODE:
NONGMAT000502, E-value = 4e-129

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30229606Theobroma cacaoAnanas comosus59.1450.7985.44673forward
CNT30128346Theobroma cacaoCorymbia citriodora58.7972.0184.6669forward
CNT30113924Theobroma cacaoFicus carica57.2161.5384.33651forward

Expression of CNT3033611

Peptides detected in this lncRNA

>peptide 1 (81 aa)
VPVMQNTINLYSETAYLPINHFYHHLEANKCKKLVSYRLIQADITIIAKGVKMSNTFEKMKRTKHVFILKMTKYQNQETTK*

>peptide 2 (53 aa)
MPSLSWILALTLSIVSELSTSRVMVLPVRVLTKICMPPRRRSTRWRVDSFWIL*

>peptide 3 (64 aa)
MPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICILYEGLEEEMRGATVEWKENFQRAEERRIV

Sequence

>CNT3033611
CCGTCCCCGTCATGCAGAACACTATTAACTTATATTCAGAAACAGCATACTTGCCGATCAACCATTTTTATCATCACTTAGAAGCTAATAAATGCAAAAA
ATTGGTTTCATATAGGCTTATACAAGCAGATATCACCATTATTGCGAAGGGAGTGAAAATGTCAAACACATTTGAAAAGATGAAAAGAACGAAACATGTT
TTTATTCTAAAGATGACTAAGTACCAAAATCAAGAAACGACCAAATGATATTCTAAGAGTAAAAATAACAAGCAGTTCGTTTATCCTGAACACCAGAACA
CTTAGACATATCACAGAATAACAAGCAGAGACGCAGACAGATGACTAAAAGCTCTAATTACTAAGCACCACCGCGAAGCCGAAGGACAAGGTGAAGGGTA
GACTCCTTCTGGATGTTGTAATCTGCAAGAGTACGCCCATCCTCCAATTGCTTCCCAGCGAAAATGAGCCTCTGCTGATCAGGTGGAATCCCCTCCTTAT
CTTGAATTTTCGCCTTCACGTTATCGATTGTGTCAGAACTCTCCACCTCAAGCGTAATCGTCTTTCCAGTCAGCGTCTTCACGAAGATCTGCATCCCTCC
ACGGAGCCTCAGCACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGC
TGTTGGTCCGGAGGTATGCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTGTCGATCGTGTCAGAGCTTTCGACTTCAAGAGTGATGGTCTTGCCGGTTA
GGGTTTTGACGAAGATCTGCATGCCGCCACGGAGACGGAGTACCAGGTGGAGAGTCGATTCCTTTTGGATATTGTAATCCGCAAGGGTTCGGCCGTCTTC
AAGTTGCTTGCCGGCGAAGATCAAGCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCC
ACCTCGAGGGTGATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTTGTACGAGGGATTGGAGGAGGAAATGCGAGGAGCGACGGTTGAATGGA
AAGAAAATTTTCAAAGAGCAGAAGAAAGAAGAATTGTT