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Detailed information on CNT3033609


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6K215|PIP22_ORYSJ, E-value = 3e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513856Theobroma cacaoJuglans regia16.935.1483.64110forward
CNT30730253Theobroma cacaoCorchorus capsularis32.7246.8185.45213forward
CNT30629601Theobroma cacaoVigna unguiculata15.9823.0681.73104forward

Expression of CNT3033609

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MELVADHGSPWLRTLHHLALQSQLPLPYPLLS*

>peptide 2 (44 aa)
MPTPPQSASTVFFRVSVWTLYPITVNTLTYKKRRVAMNSAISAL*

>peptide 3 (44 aa)
VECSNGSSNERPKQYQECQHHHSQHQQCSSECRFGPCTRSQSTH*

>peptide 4 (80 aa)
MAAPMKGPSNTKNANTTTVSINSVLQSVGLDLVPDHSQHTDIQKEKGSNELSNQCPVKRPLEELFCINQWSWWRIMVVLG*

Sequence

>CNT3033609
GTAGAATGCAGCAATGGCAGCTCCAATGAAAGGCCCAAGCAATACCAAGAATGCCAACACCACCACAGTCAGCATCAACAGTGTTCTTCAGAGTGTCGGT
TTGGACCTTGTACCCGATCACAGTCAACACACTGACATACAAAAAGAGAAGGGTAGCAATGAACTCAGCAATCAGTGCCCTGTAAAACGACCACTTGAAG
AGCTCTTCTGCATCAATCAATGGAGCTGGTGGCGGATCATGGTAGTCCTTGGCTGAGAACTCTCCACCACCTTGCTCTGCAGTCTCAACTTCCTTTGCCA
TATCCTCTTCTTTCCTAAAAACCTTTGAAAAACTGTGAGCAAGAACAGAAAAGAGAGCTTGGGTTTTTGGCTCTGGTGGCTGTGGATGAAGGGTTGAGTA
GGAGAAGCAGGGTATATAAGGGGGAGAGAGAAAAGGAGAGAGGATGAAAATGATTAGAGTGTGATTATGTGTAATGACATAATTTTTAGCCGTCCATTAC
ACCCTTGATATCGATTTTCTTCGTTCGCAATGGACCCACCATTAGCTAATACAACTGCTAATTTTTCTAATTTTCCCTACCTTTACTTTTCTTTTCTTCC
ATGAGGGTTTTTACCTGAGATATATATTCTAGATATTGTTCCTGTATAAAT