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Detailed information on CNT30336076


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT000710, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500634Cynara cardunculusCoffea canephora33.4682.6792.66940forward
CNT30730459Cynara cardunculusCorchorus capsularis41.1597.6491.261156forward
CNT30639077Cynara cardunculusCapsicum annuum35.4659.6194.08996forward
CNT30544087Cynara cardunculusBrassica napus35.4964.6692.58997forward
CNT30311563Cynara cardunculusCamelina sativa35.4664.3492.37996forward
CNT30212627Cynara cardunculusHelianthus annuus34.8296.0795.71978forward
CNT30719706Cynara cardunculusMalus domestica golden35.6786.4593.311002forward
CNT30356344Cynara cardunculusLactuca sativa36.144.1892.411014forward

Expression of CNT30336076

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MRPCRMWNGESQSADRLGAWTGADWCGGQSPGY*

>peptide 2 (33 aa)
MCVSQRVSKPARRKEADWRDPPSGVHRRPTLIF*

>peptide 3 (30 aa)
MRCSVRPRRPLKIRVPPAPDRTHNRIRSPR*

>peptide 4 (45 aa)
MPSYRSWLAARAVMVCLGICALPAPTCGHPIRPVLKHGPRSLTCV*

>peptide 5 (34 aa)
MPLFLDPRLASAGRSGWKTLSGGEFGWGGTSVKR*

>peptide 6 (77 aa)
MGAGDASLSDVERREPVRRSTRGMDRCRLVRRPKPRLLIYTWRCRRIDRGWQRAPSWCALASARSRHQPAGTPFGPS*

Sequence

>CNT30336076
CCAGGTCAGGTGGGACTACCCGCTGAGTTTAAGCATATTAATAAGCGGAGGAAAATAAACTTATAAGGATTCCCCTAGTAACGGCAAGCAAACCGGGAAC
AACCCATCTTGAAAATCGGGCGGCCTCGCCGTCCGAATTGTAGTCTGGAGAAGCGTCCTCAGCGGCGGACMGGGCCCAAGTCCCCTGGAAGGGGGCGCCG
GAGAGGGTGAGAGCCCCTTCGTGCCCGGACCCTATCGCACCACGAGGCGCTGTCTGCGAGTCGGGTTGTTTGGGAATGCAGCCCCAATAGGGCGGTAAAT
TCCGTCCAAGGCTAAATACCGGCGTGAGACCGATAGCAGACAAGTACCATGAGGGAAAGATGAAAATGACTTTGAAAAGAGAGTCTAAGAGTGCTTGAAA
TTGTCGGGAGGGAAGCGGATGGGAGCCGGCGATGCGTCCCTGTCGGATGTGGAACGGCGAGAGCCAGTCCGCCGATCGACTCGGGGCATGGACCGGTGCA
GATTGGTGCGGCGGCCAAAGCCCAGGCTATTGATATATACGTGGAGATGCCGTCGTATCGATCGTGGTTGGCAGCGCGCGCCGTCATGGTGTGCCTTGGC
ATCTGCGCGCTCCCGGCACCAACCTGCGGGCACCCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGTGAGTCAACGGGTGAGTAA
ACCCGCAAGGCGCAAGGAAGCTGATTGGCGGGATCCCCCTAGCGGGGTGCACCGCCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCC
TGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGGCGAAGCCAGAGGTAACTCTGGTGGAGGCTCGCAGCGATACTGACGTGCAAATCRTTCGTC
TGACTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCTGGTGTGAGTTCTATC
GGGTAAAGCGAATGATTAGAGGCATCAGGGGCGCAACACCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGGCACAGCTGCTTCGTTGAGCCATGC
CACGGAATCGAGAGCTCCAAGTGGGCCATTTTTGGTAAGAAGAACCGTCGATGCGGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGC
CGAAGAGGGGAAAGGTTCCATGTGAACGACACTTGCACATAGGTTAGTAGATCCTAAGAGACGGGGGAAGCCCGTCAGATAGCGTGTTTCGCATGAGCTT
CGAAAGGGAATCGGGTTAAAATTCCTGAACTGGGACGTGGTTGGTGACGGCAACGTTAGGGAGTCCGGAGACGTCGGCAGGGGCGTCAGGAGGAGTTATC
CTTTCTGTTTAACAGCCTGCCCACCCTGGAATCGACTCAGTCGAAGGTAGGGTCCAGTGGCTGTAAGAGCACCGTACGTCATGCGGTGTTCGGTGCGCCC
CCGGCGGCCCTTGAAAATCCGAGTGCCTCCCGCGCCCGATCGTACTCATAACCGTATCAGGTCTCCAAGATGAACAACCTCTTGTTGATGGAACAATGTA
GGCAAGGGAAGTCGGCAAAATAGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGAGGCTTGGCAGA
ATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGATTTGAGAGGTGTAGTATAAGTGGGAGCCCTCAGGCGAAAGTGA
AATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAATCGGAAGCGGGGCAATGCCCCTCTTTTTGGACCCAAGGCTCGCTTCGGCGGGTCGATCCG
GGTGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTC
GTGTGGAACATAAGGGTAAAAACTCGTTTGATTCTGATTTCCAGTACGAATACGAACCCTGAAAGCATGGCCTAACGATCCTTTAGACCTTCGGAATTTG
AAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGTCTTGTGGCAGTCAAACGTTCATAACGACTATGCTTTTTGATCCTTCGATGTCGGCTCTTC
CTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGARCGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACC
CTACTGATGATAGTGTTGCAATAGTAATTCAACCTAGTACGAGATGAACCATTGATTCGCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCACG
AAGCTACCATGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTAGAAGCAACGTGTGTGCCCGCCGCCTGTTTGCCGACCAGCAGTAGGG
GCCTCGGCCCCCAAAGGCAAGTGTCGTTGGCCAAGCCCGTGCGACGGACGAGTTACGCGGGCCGCCTTGAAGTACAATTCCCATCAAGTGACGTGTAGAA
TCCTTTGCAGACGACTTAAATACGCGACGGGGTATTGTAAGTGGCAGAGTGGTCGTGCTGCCACGATCCACTGAGATTCAGCCCTGCGTCGTTCAGATTC
GTCGCCCCCAAAGCACGTCCCCCCATATTCATTTGCACTTCTAACCCATTTTTTGGAGGCTATGTCCCCATACTTGGAAGAATTTTCACAAGTGTTGAGA
AAAAGTCAC