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Detailed information on CNT30335924


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30543279Cynara cardunculusBrassica napus22.1316.8591.62179forward
CNT30605211Cynara cardunculusGossypium raimondii22.1313.1894.97179forward
CNT30357348Cynara cardunculusLactuca sativa23.8623.2397.41193forward
CNT30574572Cynara cardunculusVitis vinifera22.132.6692.74179forward

Expression of CNT30335924

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MLLYATRFCSNIYFVELEIVQKHNHAFISYEVLFQHLLFGARNCSGRVLALLLDHGSSQLKYIVYGL

>peptide 2 (38 aa)
MTWPFRVLSFYVMNMRFAITYSWFYSSAVFVPALLICS*

>peptide 3 (39 aa)
MQLTARADDGSDVELFILGSESHFAKYPVFICLHSLVIL*

>peptide 4 (45 aa)
MMVVMLNCLFLVLKVILLNTLFLYVYILWLFYSYFTCFSLNDLAF*

Sequence

>CNT30335924
TATGCAGCTGACTGCTAGGGCGGATGATGGTAGTGATGTTGAACTGTTTATTCTTGGTTCTGAAAGTCATTTTGCTAAATACCCTGTTTTTATATGTCTA
CATTCTCTGGTTATTTTATAGTTATTTTACTTGTTTTTCATTAAATGACTTGGCCTTTTAGAGTTCTCTCTTTTTATGTCATGAACATGAGATTTGCAAT
AACATATTCTTGGTTTTATTCTTCTGCAGTTTTTGTACCAGCACTTCTTATTTGTAGCTAGAAGTTGTTTTTTATTGGACATATAAGTTGGTTTGTCAGT
CTCAAAATATGGTTTTGTATTGACTCTTGGTATCGAGTCTGGCATTGGTCATTCTCCATGGTGTTAGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGA
AGCATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGATTGGGGCTTTGAAGAAAAACAAAGACGAAGCTT
CGTTCCTCAACAAAGTATTCATTTCTTCTTCGCCAGGTTTCATTCTCTTTCTTTTTTGAAGATCTACCAGAAATTGCGACTTCAGCTTTGAAAATCCTAA
GCACAATCATGCTTTTATACGCTACGAGGTTTTGTTCCAACATTTACTTTGTGGAGCTAGAAATTGTTCAGAAGCACAATCATGCTTTTATAAGCTACGA
GGTTTTGTTCCAACACTTACTTTTTGGAGCTAGAAATTGTTCAGGACGTGTTCTTGCTCTTCTCCTAGACCATGGATCTAGCCAACTCAAGTACATTGTT
TATGGACTA