« Back to Theobroma cacao search


Detailed information on CNT3033584


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 9e-96

BLAST vs NONCODE:
NONGMAT000502, E-value = 2e-86

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700914Theobroma cacaoQuercus lobata66.8676.4685.15458forward
CNT30729080Theobroma cacaoCorchorus capsularis67.360.3488.07461forward
CNT30120665Theobroma cacaoCitrus clementina67.0141.1384.97459forward

Expression of CNT3033584

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICILYEGLEEEMRGATVEWKENFQRAEERRIV

>peptide 2 (31 aa)
KIKKRPNDILRVKITSSSFILNTRTLRHITE*

Sequence

>CNT3033584
AAAATCAAGAAACGACCAAATGATATTCTAAGAGTAAAAATAACAAGCAGTTCGTTTATCCTGAACACCAGAACACTTAGACATATCACAGAATAACAAG
CAGAGACGCAGACAGATGACTAAAAGCTCTAATTACTAAGCACCACCGCGAAGCCGAAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTG
CAAGAGTACGCCCATCCTCCAATTGCTTCCCAGCGAAAATGAGCCTCTGCTGATCAGGTGGAATCCCCTCCTTATCTTGAATTTTCGCCTTCACGTTATC
GATTGTGTCAGAACTCTCCACCTCAAGCGTAATCGTCTTTCCAGTCAGCGTCTTCACGAAGATCTGCATCCCTCCACGGAGCCTCAGCACAAGGTGAAGG
GTTGATTCCTTCTGGATATTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGAGGAATGCCTTCCT
TGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACCTCGAGGGTGATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTT
GTACGAGGGATTGGAGGAGGAAATGCGAGGAGCGACGGTTGAATGGAAAGAAAATTTTCAAAGAGCAGAAGAAAGAAGAATTGTT