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Detailed information on CNT3033564


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-150

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019810Theobroma cacaoCitrullus lanatus67.7251.1983.09686forward
CNT30729068Theobroma cacaoCorchorus capsularis68.0255.0386.07689forward
CNT30568722Theobroma cacaoActinidia chinensis67.6251.5483.8685forward

Expression of CNT3033564

Peptides detected in this lncRNA

>peptide 1 (97 aa)
MPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICILYEGLEEEMRGATVEWKENFQRAEERRIVDCKDGETKGRSGLIIYKEKISLSRKEFGIWKVP

>peptide 2 (31 aa)
KIKKRPNDILRVKITSSSFILNTRTLRHITE*

Sequence

>CNT3033564
AAAATCAAGAAACGACCAAATGATATTCTAAGAGTAAAAATAACAAGCAGTTCGTTTATCCTGAACACCAGAACACTTAGACATATCACAGAATAACAAG
CAGAGACGCAGACAGATGACTAAAAGCTCTAATTACTAAGCACCACCGCGAAGCCGAAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTG
CAAGAGTACGCCCATCCTCCAATTGCTTCCCAGCGAAAATGAGCCTCTGCTGATCAGGTGGAATCCCCTCCTTATCTTGAATTTTCGCCTTCACGTTATC
GATTGTGTCAGAACTCTCCACCTCAAGCGTAATCGTCTTTCCAGTCAGCGTCTTCACGAAGATCTGCATCCCTCCACGGAGCCTCAGCACAAGGTGAAGA
GTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTCCTGCCGTCCTCCAACTGCTTCCCGGCGAATATCAACCTCTGCTGATCCGGAGGGATCCCTTCCT
TATCCTGGATTTTTGCCTTGACGTTATCAATTGTATCCGAACTCTCTACCTCCAGGGTAATAGTTTTCCCGGTCAAGGTTTTAACGAAAATCTGCATGCC
TCCACGCAGCCTGAGCACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAT
CGCTGTTGGTCCGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACCTCGAGGGTGATGGTTTTGCCGG
TTAGGGTTTTCACGAAGATCTGCATCTTGTACGAGGGATTGGAGGAGGAAATGCGAGGAGCGACGGTTGAATGGAAAGAAAATTTTCAAAGAGCAGAAGA
AAGAAGAATTGTTGATTGCAAGGATGGGGAAACGAAAGGGAGGAGTGGTTTGATTATATACAAGGAAAAGATTAGCTTGTCAAGGAAGGAATTTGGGATC
TGGAAGGTTCCAG