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Detailed information on CNT30335348


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690827Cynara cardunculusOryza sativa98.6212.9491.88357forward
CNT30501657Cynara cardunculusCoffea canephora1007.3695.58362forward
CNT30187493Cynara cardunculusSecale cereale98.6278.6391.04357forward
CNT30220178Cynara cardunculusHordeum vulgare38.675.6795140forward
CNT30401101Cynara cardunculusTriticum turgidum98.6229.3391.32357forward
CNT30592620Cynara cardunculusMusa acuminata64.0910.293.97232forward
CNT30437037Cynara cardunculusAegilops tauschii63.5466.4796.52230forward
CNT30664530Cynara cardunculusTriticum dicoccoides92.8293.8591.07336forward
CNT30598800Cynara cardunculusFraxinus excelsior88.6786.2995.95321forward
CNT30228621Cynara cardunculusAnanas comosus60.2252.488.99218reverse complement
CNT30207841Cynara cardunculusHelianthus annuus101.6613.7496.47368forward
CNT30685635Cynara cardunculusTriticum urartu98.6237.0791.04357forward
CNT30480890Cynara cardunculusArabidopsis halleri85.6493.0993.23310forward
CNT30354619Cynara cardunculusLactuca sativa10021.7398.34362forward
CNT30574571Cynara cardunculusVitis vinifera60.223.5493.58218forward
CNT3052251Cynara cardunculusAmborella trichopoda38.672.3988.57140forward
CNT3099667Cynara cardunculusOryza rufipogon60.229.5188.53218forward
CNT30115707Cynara cardunculusOryza nivara98.628.1991.88357forward
CNT30557320Cynara cardunculusPanicum hallii96.1378.3891.09348forward

Expression of CNT30335348

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MTFSFPYMNRTSTSFVTPHRAYGSIPQPILL*

Sequence

>CNT30335348
AAACGGAGCTTGATTAGTTTCTGCTAGACAAGAAATAAAGAACATAACCAATACAGGGAACAAGGGAATACCGGACCATATCTGCTTTTGCGCCATGACA
ATCTCACTCGAATTACGGGGACCTACACATATTAGTACAGTAATAAGAATAAGACCAATAGAGACTTCATAAGGGACCATTTGAGCTGCAGATCGTAATG
CTTCTAGAAAGGCATATTTCAAATATAGAGGAGTGAAAGTTCCCAACAATCAATGACTTTTTCATTTCCTTATATGAACCGTACGAGCACGTCCTTTGTC
ACCCCCCACCGCGCTTACGGCTCTATACCCCAACCCATCTTGCTCTAGCCCCGGGTCCTTCC