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Detailed information on CNT30335253


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30403504Cynara cardunculusBeta vulgaris5.3521.2793.6247reverse complement
CNT3087623Cynara cardunculusVigna radiata5.3522.693.6247reverse complement
CNT30612440Cynara cardunculusArabis alpina5.3520.8993.6247forward
CNT30483432Cynara cardunculusChara braunii5.3523.0493.6247forward
CNT30576012Cynara cardunculusOryza barthii5.3520.1793.6247reverse complement

Expression of CNT30335253

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MKKMVVAWVNVPSDLVPHPQDFNHRFTILTPHLE*

>peptide 2 (42 aa)
MYKHLIWDFFYLDLDYDMHLFIGFASDHLIWDLDYALFIRFI*

>peptide 3 (50 aa)
MNPQLSLRDEHSPLMYLCKSTTRPSISFFFCKSSFVFSNPTPTTSFSLSR*

>peptide 4 (38 aa)
MSQRLIGSGLVKGDRVLTTNLRRRRRRRRRGRRRSRSRS

Sequence

>CNT30335253
CTTAGGCCTTCTCCAATGAAACCTTCCGCAGTGAACACCGATGAACCCACAACTCTCTCTCCGCGATGAACATTCCCCCTTGATGTATCTCTGTAAATCG
ACGACCCGACCCTCAATCTCTTTCTTTTTCTGTAAATCAAGCTTTGTCTTTAGCAACCCCACCCCCACCACATCTTTTTCCCTTTCTCGTTGATTTTTTG
GTTCACTTTTCCATCGACACAGAGATGGGGTTTGTTCATGAAGATTAGGTTGTTATTTTTTAGATTTAGGTTTTATCTTCTCGCTATTTAGATTTTGATT
TATAACACATGGTTTCATTTAGGGTTCTTATTTGGATATGTATAAACATCTTATTTGGGATTTTTTTTATTTAGATTTAGATTATGATATGCATTTGTTC
ATCGGATTTGCATCTGATCATCTAATTTGGGATTTAGATTATGCTTTGTTCATTCGATTCATCTAAATCTATTCATCCTTGGTGTTGGTTGTGATCAGTG
GTTGGTGTTAGTCACTGGTGTGAGTTGAGGATGAAAAAGATGGTTGTTGCCTGGGTGAATGTCCCTAGTGATTTGGTCCCTCATCCTCAAGACTTCAACC
ATAGATTCACAATTTTAACCCCTCACCTGGAATGACAGATTTGGAAACAGAGAGTTAGGCATGATTGTTTAAAGCATCATCTTTTGTTAAAGAAGACACC
ATTTTTCGACATATACAATACTTGAATTCTCGGTGTAGATGCTACATAGTTGGTTGAAGAATGAGTCAGAGACTCATAGGCAGTGGCTTGGTTAAGGGAG
ATCGAGTTCTCACTACCAATCTAAGGAGAAGAAGAAGAAGAAGAAGAAGGGGGAGAAGAAGAAGCAGAAGCAGAAGCAG