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Detailed information on CNT30334728


BLAST search results

BLAST vs Swiss-Prot:
sp|P14009|14KD_DAUCA, E-value = 2e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30356484Cynara cardunculusLactuca sativa49.7769.6784.71425forward

Expression of CNT30334728

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MESSLLPSHLHFFFVTFGQQLKNSIIHIFCFSDILLTFPNIFLKLL

>peptide 2 (82 aa)
MAVQRQTAASRSARPPMRVQHGVLGGVPTTRWTRSLSKSAHTPNLRVSFGQVAFLGGVPDGVGGFGDGGQGDGGGGGQAFGE*

Sequence

>CNT30334728
CAGTAAATCACATTATTATTGCAAGTTCGTAGGATTTAATTAAGATTTCGTAAAATCATTAAAATTACATATAAGTTTATTCTTGAACCATATACGTCCA
TGATTCTTTACACGTATCAATCACAATCATATAACTTCTTAATACAGCAAGTTAACTGAAGTATAAAACTTTGATAAATTCAAGAAGATAAATCTAGGAG
CATTGGAAGCCGGAGGGGACCTTCTTTCCACAGTAGTTAAGCAAGAGGCTGAGAGAGACGGGCACGTTGAGGTTGATTCCCAAGATATTAGCTTTAATGG
CGGTACAAAGGCAGACAGCAGCCTCAAGATCGGCAAGGCCGCCGATGAGGGTGCAGCATGGTGTCTTGGGTGGGGTTCCGACGACTAGGTGGACAAGGTC
ATTGAGCAAATCAGCACACACACCCAACTTGAGAGTGTCTTTTGGGCAAGTTGCCTTCTTAGGTGGCGTGCCTGATGGAGTAGGAGGCTTCGGTGATGGT
GGGCAGGGAGATGGAGGTGGGGGTGGGCAGGCTTTTGGGGAGTGAGTGGAAGTTACCAAAGTGAAGAAGAGAAGGTTCAAGGTAAGGAGAAGAGCTGTTG
TTGCGAAAGCCCTTGAAGCCATTTCTCCAAGTGGTTTTTGAGCTTTTGGGATAGTTAGAAAGTAGGTGGTTTGTTTTGTAGGAATATAGGCAAGGTGCAT
AGGTATTTATAGATACATGGAATCGTCACTGCTTCCCTCCCACTTGCATTTCTTCTTCGTTACTTTTGGACAGCAACTTAAAAACTCAATAATACATATA
TTTTGCTTCTCCGATATCTTACTCACTTTCCCCAACATCTTTTTGAAACTTCTA