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Detailed information on CNT30334725


BLAST search results

BLAST vs Swiss-Prot:
sp|P14009|14KD_DAUCA, E-value = 5e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187285Cynara cardunculusSecale cereale11.1320.8185.7177forward

Expression of CNT30334725

Peptides detected in this lncRNA

>peptide 1 (90 aa)
MAVQRQTAASRSARPPMRVQHGVLGGVPTTRWTRSLSKSAHTPNLRVSFGQVAFLGGVPDGVGGFGDGGQGDGGGGGQGDGGGGGQAFGE*

>peptide 2 (30 aa)
MVGREMEVVVGRAMEVGVGRLLGSEWKLPK*

Sequence

>CNT30334725
CAGTAAATCACATTATTATTGCAAGTTCGTAGGATTTAATTAAGATTTCGTAAAATCATTAAAATTACATATAAGTTTATTCTTGAACCATATACGTCCA
TGATTCTTTACACGTATCAATCACAATCATATAACTTCTTAATACAGCAAGTTAACTGAAGTATAAAACTTTGATAAATTCAAGAAGATAAATCTAGGAG
CATTGGAAGCCGGAGGGGACCTTCTTTCCACAGTAGTTAAGCAAGAGGCTGAGAGAGACGGGCACGTTGAGGTTGATTCCCAAGATATTAGCTTTAATGG
CGGTACAAAGGCAGACAGCAGCCTCAAGATCGGCAAGGCCGCCGATGAGGGTGCAGCATGGTGTCTTGGGTGGGGTTCCGACGACTAGGTGGACAAGGTC
ATTGAGCAAATCAGCACACACACCCAACTTGAGAGTGTCTTTTGGGCAAGTTGCCTTCTTAGGTGGCGTGCCTGATGGAGTAGGAGGCTTCGGTGATGGT
GGGCAGGGAGATGGAGGTGGTGGTGGGCAGGGCGATGGAGGTGGGGGTGGGCAGGCTTTTGGGGAGTGAGTGGAAGTTACCAAAGTGAAGAAGAGAAGGT
TCAAGGTAAGGAGAAGAGCTGTTGTTGCGAAAGCCCTTGAAGCCATTTCTCCAAGTGGTTTTTGAGCTTTTGGGATAGTTAGAAAGTAGGTG