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Detailed information on CNT30334721


BLAST search results

BLAST vs Swiss-Prot:
sp|P14009|14KD_DAUCA, E-value = 3e-28

BLAST vs NONCODE:
NONVVIT001900, E-value = 2e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548039Cynara cardunculusIpomoea triloba19.832.2585.61139forward
CNT30488043Cynara cardunculusOlea europaea15.8127.0787.39111forward
CNT30639107Cynara cardunculusCapsicum annuum15.6726.3281.82110forward
CNT30565328Cynara cardunculusActinidia chinensis35.7569.3478.88251forward
CNT30206506Cynara cardunculusHelianthus annuus14.120.2587.8899forward
CNT30623873Cynara cardunculusDaucus carota19.9420.9987.14140forward
CNT30152734Cynara cardunculusPrunus persica20.5119.8681.94144forward
CNT30707083Cynara cardunculusPrunus avium36.6131.9779.38257forward
CNT30174473Cynara cardunculusVigna angularis13.5337.2583.1695forward

Expression of CNT30334721

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MAVQRQTAASRSTRSPRRLQQGVFGGVPTTR*

>peptide 2 (69 aa)
MQNGSLGALEAFWDLLSTVVKQQAQRNRHIEVNTQDISFNGSAKTNSCLKINKVTEEAAARSLWWCTND*

Sequence

>CNT30334721
AAAATAATATTGAGGATATATGAATTTTTATTTTTGAATAACAATAATACAACCCTAGTCACATTGTGACAGGATCGAAAATACAAGAGAAGGTGAGGAG
CATTCGTACTCAAATCAATATCTTTAACAAAATAAAACACTCAAATCTAAGATGAAAACGTACACACCAAAGAGAATGGGATCATAGAAATGAACCAACT
TTAGAAAAATGAAATAAACAATGCAAAATGGATCTCTAGGCGCATTGGAAGCCTTTTGGGACCTTCTTTCCACAGTAGTTAAGCAACAAGCTCAAAGAAA
CAGGCACATTGAGGTTAATACCCAAGACATTAGCTTTAATGGCAGTGCAAAGACAAACAGCTGCCTCAAGATCAACAAGGTCACCGAGGAGGCTGCAGCA
AGGAGTCTTTGGTGGTGTACCAACGACTAGGTGAACCAAGTCATTGAGTAAGTTAGCACATACACCTAACTTGAGGGTGTCTTTAGGGCAAGTAGTGGCT
TTGTGGTGATGATGATGTTTTGGGCTCTTTGGTGGTGGTGGGCATTGAGTTGAACTTACAAGAGTAAAGAAGAGAAGGTTGAGAGTGATGAGGAAAGCAG
TTGTTGCCAACGCCCTTGAACCCATTTCCAACGGCTAGCTTTGGGATGGATGCAAAGGGAAGGAAAACTAGCTGGCTCAAGAAGTTAATTGTTGCTAGCT
AG