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Detailed information on CNT30334464


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FIC8|GL116_ARATH, E-value = 8e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30646121Cynara cardunculusCannabis sativa20.9912.2980.71140forward

Expression of CNT30334464

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MFIWISNTKILERTWVCSHRKRTTCHEENE*

>peptide 2 (90 aa)
MTVKISLALGCVWGGLIPPGAKSMRANEIPRVLSPGNCTTVTAVTLDPTALFVSPITSSPLKKKSSATTRAGSLQNSPLTNTVKTKAENS*

Sequence

>CNT30334464
GCCTTCTAGGACCGTCAAGATTTCAGTGGCCCTAGGGTGTGTGTGGGGAGGACGAAAACATCACCCCTTTGAAGCTTTCTAGCGATAAGACGGTTTTCAG
GGTTAGATGTGACAAAACCAACTTCAAGAGTGCCTTCTATGACCGTCAAGATTTCACTGGCCCTAGGGTGTGTGTGGGGAGGGTTAATACCCCCCGGAGC
AAAGTCAATGCGAGCCAATGAAATTCCAAGAGTGTTGAGTCCTGGTAACTGTACTACAGTCACAGCGGTCACGTTAGACCCAACTGCATTATTTGTATCT
CCCATAACGTCCAGTCCACTGAAAAAGAAATCATCTGCTACCACAAGAGCCGGATCTTTGCAGAACTCACCATTGACGAACACTGTGAAAACAAAAGCAG
AAAACTCATAAGCACATACAAATACTACAAATATTCAAAATCATTTCAACATTTCAAGATCGTTTTTTACAATGTTCATTTGGATCAGCAACACAAAAAT
CCTGGAGAGGACTTGGGTCTGCAGCCATCGCAAGCGAACAACTTGCCACGAGGAGAACGAATAAAAGCAAACGAGATGTCATCGTTGATGAGTCGAAACC
AGTTCTTTGATTAACTTCGGTTGCTCGAGAAATGTGTGAGATAAGATATGGAACTCCGTGATGTTTT