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Detailed information on CNT30334113


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 3e-154

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-81

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30169896Cynara cardunculusPistacia vera37.8642.583.46683forward
CNT30608646Cynara cardunculusGossypium raimondii38.0368.3983.38686forward
CNT3051148Cynara cardunculusCucumis sativus38.0357.583.38686forward

Expression of CNT30334113

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MNLTKPRHKSQTTEYSTSRLENTILFDRIRIMNR*

>peptide 2 (37 aa)
MVSELSTSNVIVLPVNVLTKICIPPLRRRTKCRVDSF*

>peptide 3 (37 aa)
MVSELSTSNVMVFPVNVFTKICIPPRRRRTRWSVDSF*

>peptide 4 (34 aa)
VKGPSNLFISRQKNDIKHVFTCESVYHNTKRTKS*

Sequence

>CNT30334113
AGGTGAAGGGGCCGAGTAACTTGTTTATATCGCGTCAAAAAAATGACATAAAACACGTATTCACATGTGAATCAGTTTACCATAATACCAAAAGAACTAA
GTCATAGATAAACCAGATTACCACATAACATTGTTCATAACAATAACAATAAACACAACCAGCAACAAACACGGATTTCAATTACTTCCACAAACCAACA
CTTGGCTTCAATTCCCACCACGAAGTCGAAGAACAAGGTGAAGGGTAGACTCCTTCTGAATATTATAGTCAGCAAGAGTCCTTCCATCCTCCAGCTGCTT
ACCCGCAAAGATTAGCCTCTGCTGGTCAGGTGGGATTCCCTCCTTGTCTTGGATTTTCGCCTTCACGTTGTCGATGGTGTCCGAACTCTCGACTTCCAAC
GTGATCGTCTTGCCGGTCAACGTCTTAACGAAGATCTGCATACCACCTCTTAGACGCAGAACCAAGTGCAGAGTTGATTCCTTCTGAATGTTGTAGTCGG
CCAGGGTGCGGCCGTCTTCAAGTTGCTTACCGGCGAAGATCAATCTCTGCTGGTCTGGTGGAATCCCTTCTTTGTCTTGGATTTTCGCTTTCACGTTGTC
GATGGTATCCGAGCTTTCGACTTCCAACGTGATGGTCTTCCCGGTCAACGTCTTCACGAAGATCTGCATCCCACCACGGAGACGGAGGACAAGGTGGAGT
GTGGACTCCTTCTGAATGTTGTAATCGGCCAAAGTTCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGAATTCCTTCCT
TATCCTGGATTTTAGCCTTGACGTTATCGATTGTATCAGAACTCTCGACCTCGAGAGTGATCGTCTTTCCAGTTAGGGTTTTAACGAAGATCTGCATCTG
TAGACAAAGAAACCAACAATAAGAATCCATAGAACAAATTCAACTTCGAAGAATCGGATAGAAACGGATGAATTTAACAAAACCTCGACATAAATCACAA
ACCACAGAATATTCTACATCACGTCTAGAGAACACGATTTTATTTGACAGAATTCGGATCATGAACAGGTGAGGAAGAAAATTATCCAACAGAATATCCA
ATTTTAACCTCAGGTCATAAAAAGCGTCGGATCTAGGGTTTCAGAACACGGAATAAAATAAACTCCTCAAACAAAAGATCAAATTAAACCCCAGACATAA
AAAAGTGACGGAAACACGAAATCTTCAACCTACAAAATGAATTTCAACCGAAAAAATGAAGCACAGCTTCGATACCTAATTGAACACAAAAAACTTATCT
TGTTGTAAAGCATAGATGATAGAATCAGAACTCAATTATACACCTTAGAAGTCGCCGATATTTCAATCGGAAAGCTTCCTAGACCGTTGAACAAAAAATC
AACCACACAATTTCAGATCTAATCAACCAGTTTATCAAAATAGAAGTATACCAAACCAAAACCACCACCCATCAAATCAAAACCTCAAAATCAAACGATT
CAAAAACACAAGAATCAAACAATCAAAACAGAAAATCAAGAACAAGAAAAAGGGGGGAATCACGATACCTTGAGAGAAATGAAGAACAGGAACAGATATC
AATTGAAAAGAGATTGTTTTCGATTGCTTTGGTGATGAGGGAAGAACAGATATGGGGGTGGATTTATAGGAAGAGGAGGAAGGGGTCGGTCAGAGCGTAG
GATTATTATCGTGACACGTGTACGGTGGAAATTAAAAGGTGTTGCTGTCAGGCTCTGCACCACACGGCAGGGAATAGTATCTAGAGAAGGAGCGTAGTCG
TGTA