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Detailed information on CNT30334110


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-129

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30609156Cynara cardunculusGossypium raimondii85.8670.5183.53911forward
CNT30120507Cynara cardunculusCitrus clementina85.7783.6482.31910forward

Expression of CNT30334110

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MSSQRSAYRHGVVEPSEESIPSECCSLQESDRPPAAYPQGSTSAGQAGFPPCLGFSLSHCRWCPNSQLPT*

>peptide 2 (37 aa)
MVSELSTSNVMVFPVNVFTKICIPPRRRRTRWSVDSF*

>peptide 3 (40 aa)
MVSELSTSNVIVLPVNVLTKICIPPLRRRTKCRVDSFWML*

>peptide 4 (29 aa)
KVEIIETQFTKHQTIKFPNVTQTSSQFVQ*

Sequence

>CNT30334110
TTAAGGTCGAAATCATTGAAACCCAATTCACCAAACACCAAACCATCAAATTTCCGAATGTAACCCAAACAAGTTCGCAATTTGTTCAATAAACTAAAAC
ACCATCAATTCCCCACAACCAACACTCCCCCAAATATCATAGCTTCAATTCCCACCACGAAGACGAAGAACAAGGTGAAGGGTAGACTCCTTCTGAATAT
TATAGTCAGCAAGAGTCCTTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCCGGTGGAATCCCTTCCTTGTCCTGAATCTTCGCCTT
CACATTGTCGATCGTATCCGAACTCTCCACCTCCAACGTAATYGTCTTCCCAGTCAATGTCTTCACAAAGATCTGCATACCGCCACGGAGTCGTAGAACC
AAGTGAAGAGTCGATTCCTTCTGAATGTTGTAGTCTGCAAGAGTCCGACCGTCCTCCAGCTGCTTACCCGCAAGGATCAACCTCTGCTGGTCAGGCGGGA
TTCCCTCCTTGTCTTGGATTTTCGCTTTCACATTGTCGATGGTGTCCGAACTCTCAACTTCCAACGTGATTGTCTTGCCGGTCAACGTCTTAACGAAGAT
CTGCATACCCCCTCTTAGACGAAGAACCAAGTGCAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCAAGTTGCTTACCGGCG
AAGATCAATCTCTGCTGGTCTGGTGGAATCCCTTCTTTGTCTTGGATTTTCGCTTTCACGTTGTCGATGGTATCCGAGCTTTCGACTTCCAACGTGATGG
TCTTCCCGGTCAACGTCTTCACGAAGATCTGCATCCCACCACGGAGACGGAGGACAAGGTGGAGTGTGGACTCCTTCTGAATGTTGTAATCGGCCAAAGT
TCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATTTTAGCCTTGACGTTATCGATTGTA
TCAGAACTCTCGACCTCGAGAGTGATCGTCTTTCCAGTTAGGGTTTTAACGAAGATCTGCA