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Detailed information on CNT30334109


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH32|UBQ4_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 6e-166

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376617Cynara cardunculusArabidopsis thaliana46.8270.0882.71752forward
CNT30727318Cynara cardunculusCorchorus capsularis40.4156.8884.28649forward
CNT3097364Cynara cardunculusSolanum tuberosum70.3699.5682.041130forward
CNT30511508Cynara cardunculusSolanum lycopersicum69.3685.1781.61114forward
CNT30726149Cynara cardunculusLupinus angustifolius55.4846.882.6891forward
CNT3050995Cynara cardunculusCucumis sativus66.8196.4182.671073forward
CNT30114596Cynara cardunculusEutrema salsugineum55.5486.3584.3892forward

Expression of CNT30334109

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MSSQRSAYRHGVVEPSEESIPSECCSLQESDRPPAAYPQRSTSAGLVGFPPCLGFSPSRCRWCPNSRLPT*

>peptide 2 (41 aa)
KRNGLKEVKGPSNLFISRQKNDIKHVFTCESVYHNTKRTKS*

>peptide 3 (37 aa)
MVSELSTSNVIVLPVNVLTKICIPPLRRRTKCRVDSF*

>peptide 4 (37 aa)
MVSELSTSNVMVFPVNVFTKICIPPRRRRTRWSVDSF*

Sequence

>CNT30334109
TGAAGAGAAATGGCCTTAAAGAGGTGAAGGGGCCGAGTAACTTGTTTATATCGCGTCAAAAAAATGACATAAAACACGTATTCACATGTGAATCAGTTTA
CCATAATACCAAAAGAACTAAGTCATAGATAAACCAGATTACCACATAACATTGTTCATAACAATAACAATAAACACAACCAGCAACAAACACGGATTTC
AATTACTTCCACAAACCAACACTTGGCTTCAATTCCCACCACGAAGTCGAAGAACAAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCTGCAAGAGT
CCTTCCATCCTCAAGTTGCTTCCCCGCAAAGATCAACCTCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATCGTA
TCCGAACTCTCCACCTCCAACGTAATTGTCTTCCCAGTCAATGTCTTCACAAAGATCTGCATACCGCCACGGAGTCGTAGAACCAAGTGAAGAGTCGATT
CCTTCTGAATGTTGTAGTCTGCAAGAGTCCGACCGTCCTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG
GATTTTCGCCTTCACGTTGTCGATGGTGTCCGAACTCTCGACTTCCAACGTGATCGTCTTGCCGGTCAACGTCTTAACGAAGATCTGCATACCACCTCTT
AGACGCAGAACCAAGTGCAGAGTTGATTCCTTCTGAATGTTGTAGTCGGCCAGGGTGCGGCCGTCTTCAAGTTGCTTACCGGCGAAGATCAATCTCTGCT
GGTCTGGTGGAATCCCTTCTTTGTCTTGGATTTTCGCTTTCACGTTGTCGATGGTATCCGAGCTTTCGACTTCCAACGTGATGGTCTTCCCGGTCAACGT
CTTCACGAAGATCTGCATCCCACCACGGAGACGGAGGACAAGGTGGAGTGTGGACTCCTTTTGAATGTTGTAGTCGGCGAGAGTACGGCCGTCCTCGAGC
TGCTTCCCAGCGAAGATCAACCTTTGCTGATCTGGAGGAATACCTTCCTTATCCTGGATCTTGGCTTTCACGTTGTCGATCGTGTCAGAACTCTCGACTT
CCAATGTGATTGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATCCCTCCACGGAGACGGAGGACAAGGTGGAGTGTGGACTCCTTCTGAATGTTGTA
ATCGGCCAAAGTTCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATTTTAGCCTTGACG
TTATCGATTGTATCAGAACTCTCGACCTCGAGAGTGATCGTCTTTCCAGTTAGGGTTTTAACGAAGATCTGCATCTAGAAATGAAGAACAGGAACAGATA
TCAATTGAAAAGAGATTGTTTTCGATTGCTTTGGTGATGAGGGAAGAACAGATATGGGGGTGGATTTATAGGAAGAGGAGGAAGGGGTCGGTCAGAGCGT
AGGATTATTATCGTGACACGTGTACGGTGGAAATTAAAAGGTGTTGCTGTCAGGCTCTGCACCACACGGCAGGGAATAGTATCTAGAGAAGGAGCGTAGT
CGTGTA