Detailed information on CNT30334106


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 8e-132

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381201Cynara cardunculusManihot esculenta33.3772.4683.04684forward

Expression of CNT30334106

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVSELSTSNVMVFPVNVFTKICIPPRRRRTRWSVDSF*

>peptide 2 (34 aa)
MNLTKPRHKSQTTEYSTSRLENTILFDRIRIMNR*

>peptide 3 (70 aa)
MSSQRSAYRHGVVEPSEESIPSECCSLQESDRPPAAYPQRSTSAGLAGFPPCLGFSLSHCRWCPNSQLPT*

>peptide 4 (40 aa)
RNGLKEVKGPSNLFISRQKNDIKHVFTCESVYHNTKRTKS*

>peptide 5 (40 aa)
MVSELSTSNVIVLPVNVLTKICIPPLRRRTKCRVDSFWML*

Sequence

>CNT30334106
AGAGAAATGGCCTTAAAGAGGTGAAGGGGCCGAGTAACTTGTTTATATCGCGTCAAAAAAATGACATAAAACACGTATTCACATGTGAATCAGTTTACCA
TAATACCAAAAGAACTAAGTCATAGATAAACCAGATTACCACATAACATTGTTCATAACAATAACAATAAACACAACCAGCAACAAACACGGATTTCAAT
TACTTCCACAAACCAACACTTGGCTTCAATTCCCACCACGAAGTCGAAGAACAAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCTGCAAGAGTCCT
TCCATCCTCAAGTTGCTTCCCCGCAAAGATCAACCTCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATCGTATCC
GAACTCTCCACCTCCAACGTAATTGTCTTCCCAGTCAATGTCTTCACAAAGATCTGCATACCGCCACGGAGTCGTAGAACCAAGTGAAGAGTCGATTCCT
TCTGAATGTTGTAGTCTGCAAGAGTCCGACCGTCCTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGGTCTGGCGGGATTCCCTCCTTGTCTTGGAT
TTTCGCTTTCACATTGTCGATGGTGTCCGAACTCTCAACTTCCAACGTGATTGTCTTGCCGGTCAACGTCTTAACGAAGATCTGCATACCCCCTCTTAGA
CGAAGAACCAAGTGCAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCAAGTTGCTTACCGGCGAAGATCAATCTCTGCTGGT
CTGGTGGAATCCCTTCTTTGTCTTGGATTTTCGCTTTCACGTTGTCGATGGTATCCGAGCTTTCGACTTCCAACGTGATGGTCTTCCCGGTCAACGTCTT
CACGAAGATCTGCATCCCACCACGGAGACGGAGGACAAGGTGGAGTGTGGACTCCTTCTGAATGTTGTAATCGGCCAAAGTTCGGCCGTCCTCGAGTTGC
TTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATTTTAGCCTTGACGTTATCGATTGTATCAGAACTCTCGACCTCGA
GAGTGATCGTCTTTCCAGTTAGGGTTTTAACGAAGATCTGCATCTGTAGACAAAGAAACCAACAATAAGAATCCATAGAACAAATTCAACTTCGAAGAAT
CGGATAGAAACGGATGAATTTAACAAAACCTCGACATAAATCACAAACCACAGAATATTCTACATCACGTCTAGAGAACACGATTTTATTTGACAGAATT
CGGATCATGAACAGGTGAGGAAGAAAATTATCCAACAGAATATCCAATTTTAACCTCAGGTCATAAAAAGCGTCGGATCTAGGGTTTCAGAACACGGAAT
AAAATAAACTCCTCAAACAAAAGATCAAATTAAACCCCAGACATAAAAAAGTGACGGAAACACGAAATCTTCAACCTACAAAATGAATTTCAACCGAAAA
AATGAAGCACAGCTTCGATACCTAATTGAACACAAAAAACTTATCTTGTTGTAAAGCATAGATGATAGAATCAGAACTCAATTATACACCTTAGAAGTCG
CCGATATTTCAATCGGAAAGCTTCCTAGACCGTTGAACAAAAAATCAACCACACAATTTCAGATCTAATCAACCAGTTTATCAAAATAGAAGTATACCAA
ACCAAAACCACCACCCATCAAATCAAAACCTCAAAATCAAACGATTCAAAAACACAAGAATCAAACAATCAAAACAGAAAATCAAGAACAAGAAAAAGGG
GGGAATCACGATACCTTGAGAGAAATGAAGAACAGGAACAGATATCAATTGAAAAGAGATTGTTTTCGATTGCTTTGGTGATGAGGGAAGAACAGATATG
GGGGTGGATTTATAGGAAGAGGAGGAAGGGGTCGGTCAGAGCGTAGGATTATTATCGTGACACGTGTACGGTGGAAATTAAAAGGTGTTGCTGTCAGGCT
CTGCACCACACGGCAGGGAATAGTATCTAGAGAAGGAGCGTAGTCGTGTA