« Back to Cynara cardunculus search


Detailed information on CNT30334105


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-154

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532384Cynara cardunculusEucalyptus grandis56.9690.6880.711343forward
CNT30272593Cynara cardunculusChenopodium quinoa58.0256.8380.71368forward
CNT30379426Cynara cardunculusManihot esculenta37.7476.8682.13890forward
CNT3097291Cynara cardunculusSolanum tuberosum58.0688.981.31369forward
CNT30538027Cynara cardunculusBrassica napus58.172.2680.731370forward
CNT30145547Cynara cardunculusMedicago truncatula57.9768.6979.741367forward
CNT30312399Cynara cardunculusCamelina sativa46.6584.23821100forward
CNT30229013Cynara cardunculusAnanas comosus47.4170.8982.921118forward
CNT30217449Cynara cardunculusKalanchoe fedtschenkoi47.0773.5681.981110forward
CNT30623688Cynara cardunculusDaucus carota57.1260.7981.741347forward
CNT30418468Cynara cardunculusPapaver somniferum50.7699.4281.121197forward
CNT30704854Cynara cardunculusPrunus avium58.0676.7883.561369forward
CNT3024139Cynara cardunculusPopulus trichocarpa35.4577.8483.37836forward
CNT30111644Cynara cardunculusFicus carica52.2586.4681.331232forward

Expression of CNT30334105

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSNVMVFPVNVLTKICIPPLRRSTK*

>peptide 2 (37 aa)
MVSELSTSNVIVLPVNVLTKICIPPLRRRTKCRVDSF*

>peptide 3 (50 aa)
MPSLSWILAFTLSIVSELSTSSVIVFPVRVLTKICIPPRRRRTRWSVDSF*

>peptide 4 (34 aa)
MNLTKPRHKSQTTEYSTSRLENTILFDRIRIMNR*

>peptide 5 (34 aa)
VKGPSNLFISRQKNDIKHVFTCESVYHNTKRTKS*

>peptide 6 (70 aa)
MSSQRSAYRHGVVEPSEESIPSECCSLQESDRPPAAYPQRSTSAGLVGFPPCLGFSPSRCRWCPNSRLPT*

Sequence

>CNT30334105
AGGTGAAGGGGCCGAGTAACTTGTTTATATCGCGTCAAAAAAATGACATAAAACACGTATTCACATGTGAATCAGTTTACCATAATACCAAAAGAACTAA
GTCATAGATAAACCAGATTACCACATAACATTGTTCATAACAATAACAATAAACACAACCAGCAACAAACACGGATTTCAATTACTTCCACAAACCAACA
CTTGGCTTCAATTCCCACCACGAAGTCGAAGAACAAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCTGCAAGAGTCCTTCCATCCTCAAGTTGCTT
CCCCGCAAAGATCAACCTCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATCGTATCCGAACTCTCCACCTCCAAC
GTAATTGTCTTCCCAGTCAATGTCTTCACAAAGATCTGCATACCGCCACGGAGTCGTAGAACCAAGTGAAGAGTCGATTCCTTCTGAATGTTGTAGTCTG
CAAGAGTCCGACCGTCCTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATTTTCGCCTTCACGTTGTC
GATGGTGTCCGAACTCTCGACTTCCAACGTGATCGTCTTGCCGGTCAACGTCTTAACGAAGATCTGCATACCACCTCTTAGACGCAGAACCAAGTGCAGA
GTTGATTCCTTCTGAATGTTGTAGTCGGCCAGGGTGCGGCCGTCTTCGAGCTGCTTACCGGCAAAGATCAATCTCTGCTGGTCTGGTGGAATCCCTTCTT
TGTCTTGGATTTTCGCTTTGACGTTATCGATGGTGTCCGAGCTTTCAACTTCCAACGTGATGGTCTTTCCAGTCAACGTCTTAACGAAGATCTGCATACC
ACCTCTGAGACGAAGCACCAAGTGAAGGGTTGATTCCTTTTGGATATTGTAATCGGCGAGGGTACGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAAT
CTCTGTTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCTTTCACGTTGTCGATCGTGTCAGAACTCTCGACTTCCAGTGTGATTGTCTTTCCAG
TGAGGGTCTTGACGAAGATCTGCATCCCTCCACGGAGACGGAGGACAAGGTGGAGTGTGGACTCCTTTTGAATGTTGTAGTCGGCGAGAGTACGGCCGTC
CTCGAGCTGCTTCCCAGCGAAGATCAACCTTTGCTGATCTGGAGGAATACCTTCCTTATCCTGGATCTTGGCTTTCACGTTGTCGATCGTGTCAGAACTC
TCGACTTCCAATGTGATTGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATCCCTCCACGGAGACGGAGGACAAGGTGGAGTGTGGACTCCTTCTGAA
TGTTGTAATCGGCCAAAGTTCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATTTTAGC
CTTGACGTTATCGATTGTATCAGAACTCTCGACCTCGAGAGTGATCGTCTTTCCAGTTAGGGTTTTAACGAAGATCTGCATCTGTAGACAAAGAAACCAA
CAATAAGAATCCATAGAACAAATTCAACTTCGAAGAATCGGATAGAAACGGATGAATTTAACAAAACCTCGACATAAATCACAAACCACAGAATATTCTA
CATCACGTCTAGAGAACACGATTTTATTTGACAGAATTCGGATCATGAACAGGTGAGGAAGAAAATTATCCAACAGAATATCCAATTTTAACCTCAGGTC
ATAAAAAGCGTCGGATCTAGGGTTTCAGAACACGGAATAAAATAAACTCCTCAAACAAAAGATCAAATTAAACCCCAGACATAAAAAAGTGACGGAAACA
CGAAATCTTCAACCTACAAAATGAATTTCAACCGAAAAAATGAAGCACAGCTTCGATACCTAATTGAACACAAAAAACTTATCTTGTTGTAAAGCATAGA
TGATAGAATCAGAACTCAATTATACACCTTAGAAGTCGCCGATATTTCAATCGGAAAGCTTCCTAGACCGTTGAACAAAAAATCAACCACACAATTTCAG
ATCTAATCAACCAGTTTATCAAAATAGAAGTATACCAAACCAAAACCACCACCCATCAAATCAAAACCTCAAAATCAAACGATTCAAAAACACAAGAATC
AAACAATCAAAACAGAAAATCAAGAACAAGAAAAAGGGGGGAATCACGATACCTTGAGAGAAATGAAGAACAGGAACAGATATCAATTGAAAAGAGATTG
TTTTCGATTGCTTTGGTGATGAGGGAAGAACAGATATGGGGGTGGATTTATAGGAAGA