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Detailed information on CNT30334104


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH32|UBQ4_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-146

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532914Cynara cardunculusEucalyptus grandis48.9581.6381.431115forward
CNT30506305Cynara cardunculusNicotiana attenuata28.9369.8884.07659forward
CNT30510145Cynara cardunculusSolanum lycopersicum28.5345.6584.77650forward
CNT30174705Cynara cardunculusVigna angularis39.1657.6683.74892forward

Expression of CNT30334104

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MSSQRSAYRHGVVEPSEESIPSECCSLQESDRPPAAYPQRSTSAGLVGFPPCLGFSPSRCRWCPNSRLPT*

>peptide 2 (37 aa)
MVSELSTSNVIVLPVNVLTKICIPPLRRRTKCRVDSF*

>peptide 3 (34 aa)
MNLTKPRHKSQTTEYSTSRLENTILFDRIRIMNR*

>peptide 4 (50 aa)
MPSLSWILAFTLSIVSELSTSSVIVFPVRVLTKICIPPRRRRTRWSVDSF*

>peptide 5 (40 aa)
RNGLKEVKGPSNLFISRQKNDIKHVFTCESVYHNTKRTKS*

>peptide 6 (31 aa)
MVSELSTSNVMVFPVNVLTKICIPPLRRSTK*

Sequence

>CNT30334104
AGAGAAATGGCCTTAAAGAGGTGAAGGGGCCGAGTAACTTGTTTATATCGCGTCAAAAAAATGACATAAAACACGTATTCACATGTGAATCAGTTTACCA
TAATACCAAAAGAACTAAGTCATAGATAAACCAGATTACCACATAACATTGTTCATAACAATAACAATAAACACAACCAGCAACAAACACGGATTTCAAT
TACTTCCACAAACCAACACTTGGCTTCAATTCCCACCACGAAGTCGAAGAACAAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCTGCAAGAGTCCT
TCCATCCTCAAGTTGCTTCCCCGCAAAGATCAACCTCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATCGTATCC
GAACTCTCCACCTCCAACGTAATTGTCTTCCCAGTCAATGTCTTCACAAAGATCTGCATACCGCCACGGAGTCGTAGAACCAAGTGAAGAGTCGATTCCT
TCTGAATGTTGTAGTCTGCAAGAGTCCGACCGTCCTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGAT
TTTCGCCTTCACGTTGTCGATGGTGTCCGAACTCTCGACTTCCAACGTGATCGTCTTGCCGGTCAACGTCTTAACGAAGATCTGCATACCACCTCTTAGA
CGCAGAACCAAGTGCAGAGTTGATTCCTTCTGAATGTTGTAGTCGGCCAGGGTGCGGCCGTCTTCGAGCTGCTTACCGGCAAAGATCAATCTCTGCTGGT
CTGGTGGAATCCCTTCTTTGTCTTGGATTTTCGCTTTGACGTTATCGATGGTGTCCGAGCTTTCAACTTCCAACGTGATGGTCTTTCCAGTCAACGTCTT
AACGAAGATCTGCATACCACCTCTGAGACGAAGCACCAAGTGAAGGGTTGATTCCTTTTGGATATTGTAATCGGCGAGGGTACGGCCATCTTCCAGCTGT
TTGCCGGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCTTTCACGTTGTCGATCGTGTCAGAACTCTCGACTTCCA
GTGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCATCCCTCCACGGAGACGGAGGACAAGGTGGAGTGTGGACTCCTTCTGAATGTTGTAATC
GGCCAAAGTTCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATTTTAGCCTTGACGTTA
TCGATTGTATCAGAACTCTCGACCTCGAGAGTGATCGTCTTTCCAGTTAGGGTTTTAACGAAGATCTGCATCTGTAGACAAAGAAACCAACAATAAGAAT
CCATAGAACAAATTCAACTTCGAAGAATCGGATAGAAACGGATGAATTTAACAAAACCTCGACATAAATCACAAACCACAGAATATTCTACATCACGTCT
AGAGAACACGATTTTATTTGACAGAATTCGGATCATGAACAGGTGAGGAAGAAAATTATCCAACAGAATATCCAATTTTAACCTCAGGTCATAAAAAGCG
TCGGATCTAGGGTTTCAGAACACGGAATAAAATAAACTCCTCAAACAAAAGATCAAATTAAACCCCAGACATAAAAAAGTGACGGAAACACGAAATCTTC
AACCTACAAAATGAATTTCAACCGAAAAAATGAAGCACAGCTTCGATACCTAATTGAACACAAAAAACTTATCTTGTTGTAAAGCATAGATGATAGAATC
AGAACTCAATTATACACCTTAGAAGTCGCCGATATTTCAATCGGAAAGCTTCCTAGACCGTTGAACAAAAAATCAACCACACAATTTCAGATCTAATCAA
CCAGTTTATCAAAATAGAAGTATACCAAACCAAAACCACCACCCATCAAATCAAAACCTCAAAATCAAACGATTCAAAAACACAAGAATCAAACAATCAA
AACAGAAAATCAAGAACAAGAAAAAGGGGGGAATCACGATACCTTGAGAGAAATGAAGAACAGGAACAGATATCAATTGAAAAGAGATTGTTTTCGATTG
CTTTGGTGATGAGGGAAGAACAGATATGGGGGTGGATTTATAGGAAGAGGAGGAAGGGGTCGGTCAGAGCGTAGGATTATTATCGTGACACGTGTACGGT
GGAAATTAAAAGGTGTTGCTGTCAGGCTCTGCACCACACGGCAGGGAATAGTATCTAGAGAAGGAGCGTAGTCGTGTA