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Detailed information on CNT30334103


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH32|UBQ4_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 6e-166

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30169886Cynara cardunculusPistacia vera56.5366.0783.931139forward
CNT30608559Cynara cardunculusGossypium raimondii56.6774.8482.841142forward
CNT30359535Cynara cardunculusLactuca sativa45.6654.4784.02920forward
CNT3032244Cynara cardunculusTheobroma cacao45.2679.3783.22912forward

Expression of CNT30334103

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVSELSTSNVMVFPVNVFTKICIPPRRRRTRWSVDSF*

>peptide 2 (34 aa)
MNLTKPRHKSQTTEYSTSRLENTILFDRIRIMNR*

>peptide 3 (29 aa)
KVEIIETQFTKHQTIKFPNVTQTSSQFVQ*

>peptide 4 (70 aa)
MSSQRSAYRHGVVEPSEESIPSECCSLQESDRPPAAYPQGSTSAGQAGFPPCLGFSLSHCRWCPNSQLPT*

>peptide 5 (40 aa)
MVSELSTSNVIVLPVNVLTKICIPPLRRRTKCRVDSFWML*

Sequence

>CNT30334103
TTAAGGTCGAAATCATTGAAACCCAATTCACCAAACACCAAACCATCAAATTTCCGAATGTAACCCAAACAAGTTCGCAATTTGTTCAATAAACTAAAAC
ACCATCAATTCCCCACAACCAACACTCCCCCAAATATCATAGCTTCAATTCCCACCACGAAGACGAAGAACAAGGTGAAGGGTAGACTCCTTCTGAATAT
TATAGTCAGCAAGAGTCCTTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCCGGTGGAATCCCTTCCTTGTCCTGAATCTTCGCCTT
CACATTGTCGATCGTATCCGAACTCTCCACCTCCAACGTAATYGTCTTCCCAGTCAATGTCTTCACAAAGATCTGCATACCGCCACGGAGTCGTAGAACC
AAGTGAAGAGTCGATTCCTTCTGAATGTTGTAGTCTGCAAGAGTCCGACCGTCCTCCAGCTGCTTACCCGCAAGGATCAACCTCTGCTGGTCAGGCGGGA
TTCCCTCCTTGTCTTGGATTTTCGCTTTCACATTGTCGATGGTGTCCGAACTCTCAACTTCCAACGTGATTGTCTTGCCGGTCAACGTCTTAACGAAGAT
CTGCATACCCCCTCTTAGACGAAGAACCAAGTGCAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCAAGTTGCTTACCGGCG
AAGATCAATCTCTGCTGGTCTGGTGGAATCCCTTCTTTGTCTTGGATTTTCGCTTTCACGTTGTCGATGGTATCCGAGCTTTCGACTTCCAACGTGATGG
TCTTCCCGGTCAACGTCTTCACGAAGATCTGCATCCCACCACGGAGACGGAGGACAAGGTGGAGTGTGGACTCCTTTTGAATGTTGTAGTCGGCGAGAGT
ACGGCCGTCCTCGAGCTGCTTCCCAGCGAAGATCAACCTTTGCTGATCTGGAGGAATACCTTCCTTATCCTGGATCTTGGCTTTCACGTTGTCGATCGTG
TCAGAACTCTCGACTTCCAATGTGATTGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATCCCTCCACGGAGACGGAGGACAAGGTGGAGTGTGGACT
CCTTCTGAATGTTGTAATCGGCCAAAGTTCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGAATTCCTTCCTTATCCTG
GATTTTAGCCTTGACGTTATCGATTGTATCAGAACTCTCGACCTCGAGAGTGATCGTCTTTCCAGTTAGGGTTTTAACGAAGATCTGCATCTGTAGACAA
AGAAACCAACAATAAGAATCCATAGAACAAATTCAACTTCGAAGAATCGGATAGAAACGGATGAATTTAACAAAACCTCGACATAAATCACAAACCACAG
AATATTCTACATCACGTCTAGAGAACACGATTTTATTTGACAGAATTCGGATCATGAACAGGTGAGGAAGAAAATTATCCAACAGAATATCCAATTTTAA
CCTCAGGTCATAAAAAGCGTCGGATCTAGGGTTTCAGAACACGGAATAAAATAAACTCCTCAAACAAAAGATCAAATTAAACCCCAGACATAAAAAAGTG
ACGGAAACACGAAATCTTCAACCTACAAAATGAATTTCAACCGAAAAAATGAAGCACAGCTTCGATACCTAATTGAACACAAAAAACTTATCTTGTTGTA
AAGCATAGATGATAGAATCAGAACTCAATTATACACCTTAGAAGTCGCCGATATTTCAATCGGAAAGCTTCCTAGACCGTTGAACAAAAAATCAACCACA
CAATTTCAGATCTAATCAACCAGTTTATCAAAATAGAAGTATACCAAACCAAAACCACCACCCATCAAATCAAAACCTCAAAATCAAACGATTCAAAAAC
ACAAGAATCAAACAATCAAAACAGAAAATCAAGAACAAGAAAAAGGGGGGAATCACGATACCTTGAGAGAAATGAAGAACAGGAACAGATATCAATTGAA
AAGAGATTGTTTTCG