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Detailed information on CNT30334102


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH32|UBQ4_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-147

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701438Cynara cardunculusQuercus lobata46.6470.4681.711028forward
CNT3061767Cynara cardunculusArabidopsis lyrata41.3855.8581.36912forward
CNT30623044Cynara cardunculusDaucus carota50.8656.8582.781121forward
CNT30120072Cynara cardunculusCitrus clementina35.5367.3382.63783forward

Expression of CNT30334102

Peptides detected in this lncRNA

>peptide 1 (95 aa)
MQLKTRRFFDQKVPMPVDEHKINHTISDQNNQFIKXKVYQTKTTDHQITISNQYQTIQKRKNQTENEENDDTLRELMKNTNRYQLKRDCFRLLWG*

>peptide 2 (35 aa)
MNNGRKNLIQEKIRQPFNLTSDHKKRPIYGLKNTE*

>peptide 3 (70 aa)
MSSQRSAYRHGVVEPSEESIPSECCSLQESDRPPAAYPQRSTSAGLVGSPPCLGFSLSHCRSCLNSRLPT*

>peptide 4 (31 aa)
MVSELXTSNVMVFPVNVLXKICIPPLRRSTK*

>peptide 5 (32 aa)
MNHKLQNSHHEQREEESDPRENQTTIQFDLRS*

Sequence

>CNT30334102
CACGTATTCACATGTGAATCAGTTTACCATAATACCAAAAGAACTAAGTCATAGATAAACCAGATTACCACATAACATTGTTCATAACAATAACAATAAA
CACAACCAGCAACAAACACGGATTTCAATTACTTCCACAAACCAACACTTGGCTTCAATTCCCACCACGAAGTCGAAGAACAAGGTGAAGAGTAGACTCT
TTCTGAATATTGTAGTCTGCAAGAGTCCTTCCATCCTCAAGTTGCTTCCCCGCAAAGATCAACCTCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGAA
TCTTCGCCTTCACATTGTCGATCGTATCCGAACTCTCCACCTCCAACGTAATTGTCTTCCCAGTCAATGTCTTCACAAAGATCTGCATACCGCCACGGAG
TCGTAGAACCAAGTGAAGAGTCGATTCCTTCTGAATGTTGTAGTCTGCAAGAGTCCGACCGTCCTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGG
TCTGGTGGGATCCCCTCCTTGTCTTGGATTTTCGCTTTCACATTGTCGATCGTGTCTGAACTCTCGACTTCCAACGTGATAGTCTTTCCGGTCAACGTCT
TAACGAAGATCTGCATACCGCCTCTTAGACGGAGGACCAAGTGCAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCTTCAAGCTG
CTTACCGGCAAAGATCAATCTCTGCTGGTCTGGTGGAATCCCTTCTTTGTCTTGGATTTTCGCTTTCACGTTATCGATGGTGTCCGAGCTTTCRACTTCC
AACGTGATGGTCTTTCCAGTCAACGTCTTAACRAAGATCTGCATACCACCTCTGAGACGAAGCACCAAGTGAAGGGTTGATTCCTTTTGGATATTGTAAT
CGGCGAGGGTACGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAATCTCTGTTGGTCKGGGGGAATRCCTTCCTTATCCTGGATCTTKGCTTTCACGTT
GTCGATCGTGTCAGAACTCTCRACTTCCARTGTGATTGTCTTYCCAGTGAGGGTCTTGACGAAGATCTGCATCCCTCCACGGAGACGGAGGACAAGGTGG
AGTGTGGACTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCGTCCTCTAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGAATTCCTT
CCTTATCCTGGATTTTGGCCTTGACGTTATCGATTGTATCAGAACTCTCGACCTCGAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACGAATATTTGCAT
CTGTAGACAAAGAAACGAACACTAAGAATCCAATAAACACAGCAGATGAAACAAAACCTGAACATGAATCACAAACAACATGAATCATAAACTACAGAAT
TCACATCATGAACAACGGGAGGAAGAATCTGATCCAAGAGAAAATCAGACAACCATTCAATTTGACCTCAGATCATAAAAAGCGTCCGATCTATGGTCTC
AAAAACACGGAATAAAAGAAACTTATCAAATTGATCTTTTTCATAAAAGGCGTCGGATCTATGGTTTGAGAACACGAAATTTTCAACCTATACAAAGAAT
TTCAAGCGGAAAAATGAAGTACAGCTTCGATATTTCAATTGAACACAAAAAATTTCTGATCTTGTTGTAGAACCTAGACGATAAAATCAAAACTCAATTA
TACAACTTAGAAATAGCCGATCTTCCGATCAAAAAGTTTCCAAGCCCTTTGACGAACATAGAATCAACCATATAATTTCACATCCAATCAATTATGCAAC
TTAAAACTAGACGATTTTTCGATCAAAAAGTTCCCATGCCCGTTGACGAACATAAAATCAACCACACAATTTCAGATCAAAACAATCAGTTCATCAAART
CAAAGTATACCAAACCAAAACCACCGATCATCAAATCACAATCTCAAATCAGTATCAAACGATTCAAAAACGCAAGAACCAAACAGAAAATGAAGAAAAT
GACGATACCTTGAGAGAATTAATGAAGAACACGAACAGATACCAATTAAAAAGAGATTGCTTTCGATTGCTGTGGGGATGAAGGAAAGATGGATATGGGG
ATGGATTTATAGGAAGAGGAAGAAGGATGTGGGTCATACGGCAAGTTGATCATCATGACACGTGTATGGTGGAGATTAAAGGGTATTGCTGTCAAGCTGT
AAAC