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Detailed information on CNT30334101


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH32|UBQ4_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 5e-142

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30622816Cynara cardunculusDaucus carota50.5659.6383.051121forward
CNT30321313Cynara cardunculusAsparagus officinalis48.9982.8481.491086forward

Expression of CNT30334101

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSNVMVFPVNVLTKICIPPLRRSTK*

>peptide 2 (37 aa)
MVSELSTSNVIVLPVNVLTKICIPPLRRRTKCRVDSF*

>peptide 3 (34 aa)
VKGPSNLFISRQKNDIKHVFTCESVYHNTKRTKS*

>peptide 4 (70 aa)
MSSQRSAYRHGVVEPSEESIPSECCSLQESDRPPAAYPQRSTSAGLVGFPPCLGFSPSRCRWCPNSRLPT*

>peptide 5 (95 aa)
MQLKTRRFFDQKVPMPVDEHKINHTISDQNNQFIKXKVYQTKTTDHQITISNQYQTIQKRKNQTENEENDDTLRELMKNTNRYQLKRDCFRLLWG*

>peptide 6 (53 aa)
MPSLSWILAFTLSIVSELSTSSVIVFPVRVLTKICIPPRRRRTRWSVDSFWML*

>peptide 7 (64 aa)
MNTGRKNLIHEKIRPPFNLTSDHKKRRIYGLRTRNFQPIQRISSGKMKYSFDISIEHKKFLILL*

Sequence

>CNT30334101
AGGTGAAGGGGCCGAGTAACTTGTTTATATCGCGTCAAAAAAATGACATAAAACACGTATTCACATGTGAATCAGTTTACCATAATACCAAAAGAACTAA
GTCATAGATAAACCAGATTACCACATAACATTGTTCATAACAATAACAATAAACACAACCAGCAACAAACACGGATTTCAATTACTTCCACAAACCAACA
CTTGGCTTCAATTCCCACCACGAAGTCGAAGAACAAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCTGCAAGAGTCCTTCCATCCTCAAGTTGCTT
CCCCGCAAAGATCAACCTCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATCGTATCCGAACTCTCCACCTCCAAC
GTAATTGTCTTCCCAGTCAATGTCTTCACAAAGATCTGCATACCGCCACGGAGTCGTAGAACCAAGTGAAGAGTCGATTCCTTCTGAATGTTGTAGTCTG
CAAGAGTCCGACCGTCCTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATTTTCGCCTTCACGTTGTC
GATGGTGTCCGAACTCTCGACTTCCAACGTGATCGTCTTGCCGGTCAACGTCTTAACGAAGATCTGCATACCACCTCTTAGACGCAGAACCAAGTGCAGA
GTTGATTCCTTCTGAATGTTGTAGTCGGCCAGGGTGCGGCCGTCTTCGAGCTGCTTACCGGCAAAGATCAATCTCTGCTGGTCTGGTGGAATCCCTTCTT
TGTCTTGGATTTTCGCTTTGACGTTATCGATGGTGTCCGAGCTTTCAACTTCCAACGTGATGGTCTTTCCAGTCAACGTCTTAACGAAGATCTGCATACC
ACCTCTGAGACGAAGCACCAAGTGAAGGGTTGATTCCTTTTGGATATTGTAATCGGCGAGGGTACGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAAT
CTCTGTTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCTTTCACGTTGTCGATCGTGTCAGAACTCTCGACTTCCAGTGTGATTGTCTTTCCAG
TGAGGGTCTTGACGAAGATCTGCATCCCTCCACGGAGACGGAGGACAAGGTGGAGTGTGGACTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCGTC
CTCTAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATTTTGGCCTTGACGTTATCGATTGTATCAGAACTC
TCGACCTCGAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAGATCTGCATCTGTAGACATAGAAACGAACACTAAGAATCCAATAGAACACAGCAGA
TGAAACAAAACCTCAACATGAATCACAAACTACAGAATTTTCTAAAGTACGTCTAGAAAACACAATTTTATTTGCCAGAATTCACATCATGAACACCGGG
AGGAAGAATCTTATCCATGAAAAAATCAGACCACCATTCAATTTAACCTCAGATCATAAAAAGCGTCGGATCTATGGTTTGAGAACACGAAATTTTCAAC
CTATACAAAGAATTTCAAGCGGAAAAATGAAGTACAGCTTCGATATTTCAATTGAACACAAAAAATTTCTGATCTTGTTGTAGAACCTAGACGATAAAAT
CAAAACTCAATTATACAACTTAGAAATAGCCGATCTTCCGATCAAAAAGTTTCCAAGCCCTTTGACGAACATAGAATCAACCATATAATTTCACATCCAA
TCAATTATGCAACTTAAAACTAGACGATTTTTCGATCAAAAAGTTCCCATGCCCGTTGACGAACATAAAATCAACCACACAATTTCAGATCAAAACAATC
AGTTCATCAAARTCAAAGTATACCAAACCAAAACCACCGATCATCAAATCACAATCTCAAATCAGTATCAAACGATTCAAAAACGCAAGAACCAAACAGA
AAATGAAGAAAATGACGATACCTTGAGAGAATTAATGAAGAACACGAACAGATACCAATTAAAAAGAGATTGCTTTCGATTGCTGTGGGGATGAAGGAAA
GATGGATATGGGGATGGATTTATAGGAAGAGGAAGAAGGATGTGGGTCATACGGCAAGTTGATCATCATGACACGTGTATGGTGGAGATTAAAGGGTATT
GCTGTCAAGCTGTAAAC