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Detailed information on CNT30334097


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-129

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727322Cynara cardunculusCorchorus capsularis81.4470.4282.79895forward
CNT30214147Cynara cardunculusHelianthus annuus61.9784.784.14681forward
CNT30622898Cynara cardunculusDaucus carota81.2651.284.55893forward
CNT30120658Cynara cardunculusCitrus clementina76.3483.482.48839forward
CNT3036185Cynara cardunculusCucumis melo51.7755.484.36569forward

Expression of CNT30334097

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MSSQRSAYRHGVVEPSEESIPSECCSLQESDRPPAAYPQRSTSAGLVGSPPCLGFSLSHCRSCLNSRLPT*

>peptide 2 (37 aa)
MVSELSTSNVMVFPVNVFTKICIPPRRRRTRWSVDSF*

Sequence

>CNT30334097
CAAAAGAACTAAGTCATAGATAAACCAGATTACCACATAACATTGTTCATAACAATAACAATAAACACAACCAGCAACAAACACGGATTTCAATTACTTC
CACAAACCAACACTTGGCTTCAATTCCCACCACGAAGTCGAAGAACAAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCTGCAAGAGTCCTTCCATC
CTCAAGTTGCTTCCCCGCAAAGATCAACCTCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATCGTATCCGAACTC
TCCACCTCCAACGTAATTGTCTTCCCAGTCAATGTCTTCACAAAGATCTGCATACCGCCACGGAGTCGTAGAACCAAGTGAAGAGTCGATTCCTTCTGAA
TGTTGTAGTCTGCAAGAGTCCGACCGTCCTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCTTGGATTTTCGC
TTTCACATTGTCGATCGTGTCTGAACTCTCGACTTCCAACGTGATAGTCTTTCCGGTCAACGTCTTAACGAAGATCTGCATACCGCCTCTTAGACGGAGG
ACCAAGTGCAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCTTCAAGTTGCTTACCGGCGAAGATCAATCTCTGCTGGTCTGGTG
GAATCCCTTCTTTGTCTTGGATTTTCGCTTTCACGTTGTCGATGGTATCCGAGCTTTCGACTTCCAACGTGATGGTCTTCCCGGTCAACGTCTTCACGAA
GATCTGCATCCCACCACGGAGACGGAGGACAAGGTGGAGTGTGGACTCCTTCTGAATGTTGTAATCGGCCAAAGTTCGGCCGTCCTCGAGTTGCTTTCCG
GCGAAGATCAATCTTTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATTTTAGCCTTGACGTTATCGATTGTATCAGAACTCTCGACCTCGAGAGTGA
TCGTCTTTCCAGTTAGGGTTTTAACGAAGATCTGCATCTGTAGACAAAGAAACCAACAATAAGAATCCATAGAACAAATTCAACTTCGAAGAATCGGAT