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Detailed information on CNT30333676


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39817|CALX_SOYBN, E-value = 6e-71

BLAST vs NONCODE:
NONVVIT003147, E-value = 1e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517614Cynara cardunculusJuglans regia39.5338.7880.88204forward
CNT30377662Cynara cardunculusArabidopsis thaliana35.2720.1381.87182forward
CNT30278532Cynara cardunculusChenopodium quinoa45.3521.2982.05234forward
CNT30728459Cynara cardunculusCorchorus capsularis42.8335.6578.73221forward
CNT30629341Cynara cardunculusVigna unguiculata40.719.2382.38210forward
CNT30164689Cynara cardunculusPistacia vera88.1882.7380455forward
CNT30561419Cynara cardunculusActinidia chinensis10081.7779.07516forward
CNT30238817Cynara cardunculusBrassica oleracea39.3438.0981.77203forward
CNT30144554Cynara cardunculusMedicago truncatula45.9327.6981.86237forward
CNT30264134Cynara cardunculusBrassica rapa34.1120.381.82176forward
CNT30605054Cynara cardunculusGossypium raimondii47.6743.3980.49246forward
CNT30126269Cynara cardunculusCorymbia citriodora16.4722.4387.0685forward
CNT30349705Cynara cardunculusEragrostis tef31.423.1181.48162forward
CNT30365925Cynara cardunculusSorghum bicolor50.9729.6279.09263forward
CNT30120413Cynara cardunculusCitrus clementina98.8463.0480.2510forward
CNT30101562Cynara cardunculusOryza rufipogon52.7131.4879.78272forward
CNT30585446Cynara cardunculusEchinochloa crusgalli16.4728.1584.7185forward
CNT30725707Cynara cardunculusLupinus angustifolius45.9343.0181.43237forward

Expression of CNT30333676

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MVFSILRIQMQLHISGCRSWEPPTHHPPHRPNPRAFCHLGREWFLMGLVRVRSLRMIGN*

>peptide 2 (82 aa)
MVFDGISAGSKSSDDRKLAFFFSSPSTRILTSLSGFKIAVYTWVNLSEGTEGGNLRWCSTYSPLLGFLCFKMKWTLFVAPHLS

>peptide 3 (91 aa)
SNWLKVRGFKFKVARVWNFLRLPDTLISRVVNKRSMPFTLISWVPFQWSSPFSASRCSFTFRVVDLGSLPLTILLIVPILGLFVIWVGNGF*

Sequence

>CNT30333676
AGCAATTGGCTCAAAGTTAGGGGTTTCAAGTTCAAAGTAGCTAGGGTTTGGAATTTCTTGAGGCTTCCAGATACCCTTATAAGCAGGGTTGTCAATAAGA
GGAGCATGCCATTTACCCTTATAAGCTGGGTTCCTTTTCAATGGTCTTCTCCATTCTCCGCATCCAGATGCAGCTTCACATTTCGGGTTGTCGATCTTGG
GAGCCTCCCACTCACCATCCTCCTCATCGTCCCAATCCTCGGGCTTTTTGTCATCTGGGTCGGGAATGGTTTTTGATGGGATTAGTGCGGGTTCGAAGTC
TTCGGATGATAGGAAATTAGCCTTCTTTTTCTCTTCTCCATCAACCAGGATTCTGACCTCGTTGTCAGGTTTCAAAATAGCAGTGTATACGTGGGTCAAT
TTATCTGAAGGCACGGAAGGGGGGAATTTGAGGTGGTGTTCAACATACTCTCCGCTCTTGGGGTTCTTGTGTTTTAAGATGAAATGGACCTTATTTGTGG
CACCACATTTGTCGGG