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Detailed information on CNT30333557


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30161291Cynara cardunculusPistacia vera30.0410.2383.58134forward
CNT30104396Cynara cardunculusOryza rufipogon24.2210.0682.41108reverse complement

Expression of CNT30333557

Peptides detected in this lncRNA

>peptide 1 (37 aa)
NLTRYYGTWKSKLVLVTTLSVKEFFFFFNYNTRVPVH*

Sequence

>CNT30333557
AATTTAACCAGGTATTATGGGACATGGAAAAGCAAATTGGTGTTGGTAACAACTCTTTCAGTTAAGGAGTTTTTTTTTTTTTTTAATTATAATACTAGAG
TGCCGGTTCATTAGGGTCGTCATCTTCGAGCCAACTACTGGAAAAGTATCTACCGTTTTCTTCGTCTGTTAAGCCTCACAGCTTCCTAAAGRAAACTGCA
ATCGCAGTTTATCAGCCACTCACAAGACCACCTGGAGTGTCTGTCAAGGGTGCTAGCGCATACCCTGAAGTGATCATCACCATCTGGCATCTACACCTCA
CATTTCGACACAGTACAACGTGTAAACCCGCCTGCTGTTCGACAAAAGGAATTTTGGGGGGTTATGGTCAATGAGGCTTTGTTATATCATAATATGTTTC
CATGTTAAATCAGTGGAAAATTGGTTATATATTTGTAATGACAAAG