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Detailed information on CNT30333478


BLAST search results

BLAST vs Swiss-Prot:
sp|P49035|SUS1_DAUCA, E-value = 6e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678571Cynara cardunculusSetaria viridis15.5320.7386.2580forward
CNT3061548Cynara cardunculusArabidopsis lyrata25.441680.92131forward
CNT30626879Cynara cardunculusDaucus carota41.3638.2483.1213forward
CNT30621781Cynara cardunculusCajanus cajan41.9473.7280.09216forward

Expression of CNT30333478

Peptides detected in this lncRNA

>peptide 1 (36 aa)
LNHRQPKCLVKCRLNKGSPRVCNHTVQLPIPHSIHL*

Sequence

>CNT30333478
CTCAACCACCGTCAACCCAAATGCCTCGTAAAATGCAGGCTGAATAAAGGCTCCCCTCGTGTCTGCAATCACACGGTACAACTCCCCATTCCTCATTCTA
TTCATCTGTGAAGATATCCATCTAAACTGTCCATTCAGCTTGTAGTCCTCAATCAGCTGATACATCTTCTTCATCTGGGCTTGCTCTTCAAGATCTTTTG
ATTCCTTCCTTCTGTCACCACCCACCACAACAAGGTTCACCAATTCACGAAGACGCTCATTCTTGGCATACCACTCCACCAATCCTGTTAAGTTCTTCAC
ATTGTCCAATCTTGCCATTGTGAATAGTGTTCTTCGTTCTCAACAGAACTGAAGAGGAGTTCTTCAATTTCTGGGTGGAGTGCAGTCAGCCTCCTTTCTT
TCTCAGTATAAGAGTAGTAGATCCCCATATCAGCACCAGGTGAAACAATATTGAACTTGGGGTCAAAGACATCTATTCCATGGACGACCCTGTACAGTCC
AGGCATTGTGAAAGC